Harmen J. Bussemaker

According to our database1, Harmen J. Bussemaker authored at least 9 papers between 2000 and 2008.

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Bibliography

2008
TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors.
Nucleic Acids Research, 2008

Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007
Dissecting complex transcriptional responses using pathway-level scores based on prior information.
BMC Bioinformatics, 2007

2006
Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005
T-profiler: scoring the activity of predefined groups of genes using gene expression data.
Nucleic Acids Research, 2005

2004
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.
BMC Bioinformatics, 2004

2003
REDUCE: an online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data.
Nucleic Acids Research, 2003

2001
Regulatory element detection using correlation with expression (abstract only).
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

2000
Regulatory Element Detection Using a Probabilistic Segmentation Model.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000


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