Harmen J. Bussemaker

According to our database, Harmen J. Bussemaker authored at least 9 papers between 2000 and 2008.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2008

TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of <i>trans</i>-acting factors.

Barrett C. Foat, Ronald G. Tepper, Harmen J. Bussemaker

Nucleic Acids Res., 2008

Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences.

Lucas D. Ward, Harmen J. Bussemaker

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007

Dissecting complex transcriptional responses using pathway-level scores based on prior information.

Harmen J. Bussemaker, Lucas D. Ward, André Boorsma

BMC Bioinform., 2007

2006

Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

Barrett C. Foat, Alexandre V. Morozov, Harmen J. Bussemaker

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005

T-profiler: scoring the activity of predefined groups of genes using gene expression data.

André Boorsma, Barrett C. Foat, Daniel J. Vis, Frans Klis, Harmen J. Bussemaker

Nucleic Acids Res., 2005

2004

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.

Feng Gao, Barrett C. Foat, Harmen J. Bussemaker

BMC Bioinform., 2004

2003

REDUCE: an online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data.

Crispin Roven, Harmen J. Bussemaker

Nucleic Acids Res., 2003

2001

Regulatory element detection using correlation with expression (abstract only).

Harmen J. Bussemaker, Hao Li, Eric D. Siggia

Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

2000

Regulatory Element Detection Using a Probabilistic Segmentation Model.

Harmen J. Bussemaker, Hao Li, Eric D. Siggia

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000