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He Zhang

Orcid: 0000-0001-5877-2167

According to our database1, He Zhang authored at least 10 papers between 2019 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2023
LinearDesign.
[BibTeX]
[DOI]
He Zhang
,
Liang Zhang
,
Ziyu Li
,
Kaibo Liu
,
Boxiang Liu
,
Liang Huang
Dataset, April, 2023

LinearDesign software.
[BibTeX]
[DOI]
He Zhang
,
Liang Zhang
,
Ziyu Li
,
Kaibo Liu
,
Boxiang Liu
,
Liang Huang
Dataset, April, 2023

Algorithm for optimized mRNA design improves stability and immunogenicity.
[BibTeX]
[DOI]
He Zhang
,
Liang Zhang
,
Ang Lin
,
Congcong Xu
,
Ziyu Li
,
Kaibo Liu
,
Boxiang Liu
,
Xiaopin Ma
,
Fanfan Zhao
,
Huiling Jiang
,
Chunxiu Chen
,
Haifa Shen
,
Hangwen Li
,
David H. Mathews
,
Yujian Zhang
,
Liang Huang
Nat., 2023

LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs.
[BibTeX]
[DOI]
Sizhen Li
,
Ning Dai
,
He Zhang
,
Apoorv Malik
,
David H. Mathews
,
Liang Huang
CoRR, 2023

2022
LinearCoFold and LinearCoPartition: Linear-Time Algorithms for Secondary Structure Prediction of Interacting RNA molecules.
[BibTeX]
[DOI]
He Zhang
,
Sizhen Li
,
Liang Zhang
,
David H. Mathews
,
Liang Huang
CoRR, 2022

LinearAlifold: Linear-Time Consensus Structure Prediction for RNA Alignments.
[BibTeX]
[DOI]
Liang Zhang
,
Sizhen Li
,
He Zhang
,
David H. Mathews
,
Liang Huang
CoRR, 2022

2021
LinearTurboFold: Linear-time global prediction of conserved structures for RNA homologs with applications to SARS-CoV-2.
[BibTeX]
[DOI]
Sizhen Li
,
He Zhang
,
Liang Zhang
,
Kaibo Liu
,
Boxiang Liu
,
David H. Mathews
,
Liang Huang
Proc. Natl. Acad. Sci. USA, 2021

2020
Using Relative Lines of Code to Guide Automated Test Generation for Python.
[BibTeX]
[DOI]
Josie Holmes
,
Iftekhar Ahmed
,
Caius Brindescu
,
Rahul Gopinath
,
He Zhang
,
Alex Groce
ACM Trans. Softw. Eng. Methodol., 2020

LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities.
[BibTeX]
[DOI]
He Zhang
,
Liang Zhang
,
David H. Mathews
,
Liang Huang
Bioinform., 2020

2019
LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search.
[BibTeX]
[DOI]
Liang Huang
,
He Zhang
,
Dezhong Deng
,
Kai Zhao
,
Kaibo Liu
,
David A. Hendrix
,
David H. Mathews
Bioinform., 2019


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