Igor N. Berezovsky

According to our database, Igor N. Berezovsky authored at least 20 papers between 2000 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

AlloMAPS 2: allosteric fingerprints of the AlphaFold and Pfam-trRosetta predicted structures for engineering and design.

Zhen Wah Tan, Wei-Ven Tee, Enrico Guarnera, Igor N. Berezovsky

Nucleic Acids Res., January, 2023

2021

Deriving and Using Descriptors of Elementary Functions in Rational Protein Design.

Melvin Yin, Alexander Goncearenco, Igor N. Berezovsky

Frontiers Bioinform., 2021

2020

AlloSigMA 2: paving the way to designing allosteric effectors and to exploring allosteric effects of mutations.

Zhen Wah Tan, Enrico Guarnera, Wei-Ven Tee, Igor N. Berezovsky

Nucleic Acids Res., 2020

2019

AlloMAPS: allosteric mutation analysis and polymorphism of signaling database.

Zhen Wah Tan, Wei-Ven Tee, Enrico Guarnera, Lauren Booth, Igor N. Berezovsky

Nucleic Acids Res., 2019

2018

Reversing allosteric communication: From detecting allosteric sites to inducing and tuning targeted allosteric response.

Wei-Ven Tee, Enrico Guarnera, Igor N. Berezovsky

PLoS Comput. Biol., 2018

Exploring chromatin hierarchical organization via Markov State Modelling.

Zhen Wah Tan, Enrico Guarnera, Igor N. Berezovsky

PLoS Comput. Biol., 2018

2017

AlloSigMA: allosteric signaling and mutation analysis server.

Enrico Guarnera, Zhen Wah Tan, Zejun Zheng, Igor N. Berezovsky

Bioinform., 2017

2016

Structure-Based Statistical Mechanical Model Accounts for the Causality and Energetics of Allosteric Communication.

Enrico Guarnera, Igor N. Berezovsky

PLoS Comput. Biol., 2016

Nucleotide binding database NBDB - a collection of sequence motifs with specific protein-ligand interactions.

Zejun Zheng, Alexander Goncearenco, Igor N. Berezovsky

Nucleic Acids Res., 2016

2013

SPACER: server for predicting allosteric communication and effects of regulation.

Alexander Goncearenco, Simon Mitternacht, Taipang Yong, Birgit Eisenhaber, Frank Eisenhaber, Igor N. Berezovsky

Nucleic Acids Res., 2013

2011

Coherent Conformational Degrees of Freedom as a Structural Basis for Allosteric Communication.

Simon Mitternacht, Igor N. Berezovsky

PLoS Comput. Biol., 2011

Binding Leverage as a Molecular Basis for Allosteric Regulation.

Simon Mitternacht, Igor N. Berezovsky

PLoS Comput. Biol., 2011

Computational reconstruction of primordial prototypes of elementary functional loops in modern proteins.

Alexander Goncearenco, Igor N. Berezovsky

Bioinform., 2011

2010

Prototypes of elementary functional loops unravel evolutionary connections between protein functions.

Alexander Goncearenco, Igor N. Berezovsky

Bioinform., 2010

2008

Domain Hierarchy and closed Loops (DHcL): a server for exploring hierarchy of protein domain structure.

Grzegorz Koczyk, Igor N. Berezovsky

Nucleic Acids Res., 2008

2007

Protein and DNA Sequence Determinants of Thermophilic Adaptation.

Konstantin B. Zeldovich, Igor N. Berezovsky, Eugene I. Shakhnovich

PLoS Comput. Biol., 2007

Positive and Negative Design in Stability and Thermal Adaptation of Natural Proteins.

Igor N. Berezovsky, Konstantin B. Zeldovich, Eugene I. Shakhnovich

PLoS Comput. Biol., 2007

2006

Application of a sensitive collection heuristic for very large protein families: Evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases.

Georg Schneider, Georg Neuberger, Michael Wildpaner, Sun Tian, Igor N. Berezovsky, Frank Eisenhaber

BMC Bioinform., 2006

2005

Entropic Stabilization of Proteins and Its Proteomic Consequences.

Igor N. Berezovsky, William W. Chen, Paul J. Choi, Eugene I. Shakhnovich

PLoS Comput. Biol., 2005

2000

Hierarchy of Regions of Amino Acid Sequence with Respect to Their Role in the Protein Spatial Structure.

Igor N. Berezovsky, Natalia G. Esipova, Vladimir G. Tumanyan

J. Comput. Biol., 2000