Ioannis Tsamardinos

Orcid: 0000-0002-2492-959X

According to our database1, Ioannis Tsamardinos authored at least 101 papers between 1998 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Out-of-Sample Tuning for Causal Discovery.
IEEE Trans. Neural Networks Learn. Syst., April, 2024

Towards Automated Causal Discovery: a case study on 5G telecommunication data.
CoRR, 2024

2023
Learning biologically-interpretable latent representations for gene expression data.
Mach. Learn., November, 2023

Automated machine learning for genome wide association studies.
Bioinform., September, 2023

A meta-level analysis of online anomaly detectors.
VLDB J., July, 2023

A Meta-Level Learning Algorithm for Sequential Hyper-Parameter Space Reduction in AutoML.
CoRR, 2023

2022
The $\gamma$γ-OMP Algorithm for Feature Selection With Application to Gene Expression Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Don't lose samples to estimation.
Patterns, 2022

Credit Card Fraud Detection with Automated Machine Learning Systems.
Appl. Artif. Intell., 2022

2021
Extending greedy feature selection algorithms to multiple solutions.
Data Min. Knowl. Discov., 2021

On Predictive Explanation of Data Anomalies.
CoRR, 2021

PROTEUS: Predictive Explanation of Anomalies.
Proceedings of the 37th IEEE International Conference on Data Engineering, 2021

Heart Rate Classification Using ECG Signal Processing and Machine Learning Methods.
Proceedings of the 21st IEEE International Conference on Bioinformatics and Bioengineering, 2021

2020
Inference of Stochastic Dynamical Systems from Cross-Sectional Population Data.
CoRR, 2020

A generalised OMP algorithm for feature selection with application to gene expression data.
CoRR, 2020

Tuning Causal Discovery Algorithms.
Proceedings of the International Conference on Probabilistic Graphical Models, 2020

Putting the Human Back in the AutoML Loop.
Proceedings of the Workshops of the EDBT/ICDT 2020 Joint Conference, 2020

Pathway Activity Score Learning for Dimensionality Reduction of Gene Expression Data.
Proceedings of the Discovery Science - 23rd International Conference, 2020

Latent Feature Representations for Human Gene Expression Data Improve Phenotypic Predictions.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
A greedy feature selection algorithm for Big Data of high dimensionality.
Mach. Learn., 2019

Forward-Backward Selection with Early Dropping.
J. Mach. Learn. Res., 2019

A unified approach for sparse dynamical system inference from temporal measurements.
Bioinform., 2019

2018
Bootstrapping the out-of-sample predictions for efficient and accurate cross-validation.
Mach. Learn., 2018

Correction to: Constraint-based causal discovery with mixed data.
Int. J. Data Sci. Anal., 2018

Constraint-based causal discovery with mixed data.
Int. J. Data Sci. Anal., 2018

On scoring Maximal Ancestral Graphs with the Max-Min Hill Climbing algorithm.
Int. J. Approx. Reason., 2018

Feature selection with the R package <i>MXM</i>.
F1000Research, 2018

Feature selection for high-dimensional temporal data.
BMC Bioinform., 2018

BioDataome: a collection of uniformly preprocessed and automatically annotated datasets for data-driven biology.
Database J. Biol. Databases Curation, 2018

Mining Free-Text Medical Notes for Suicide Risk Assessment.
Proceedings of the 10th Hellenic Conference on Artificial Intelligence, 2018

2017
SCENERY: a web application for (causal) network reconstruction from cytometry data.
Nucleic Acids Res., 2017

Bootstrapping the Out-of-sample Predictions for Efficient and Accurate Cross-Validation.
CoRR, 2017

Massively-Parallel Feature Selection for Big Data.
CoRR, 2017

2016
On User-Centric Modular QoE Prediction for VoIP Based on Machine-Learning Algorithms.
IEEE Trans. Mob. Comput., 2016

A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions.
BMC Bioinform., 2016

Erratum to: A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions.
BMC Bioinform., 2016

Score-based vs Constraint-based Causal Learning in the Presence of Confounders.
Proceedings of the UAI 2016 Workshop on Causation: Foundation to Application co-located with the 32nd Conference on Uncertainty in Artificial Intelligence (UAI 2016), 2016

Marginal Causal Consistency in Constraint-based Causal Learning.
Proceedings of the UAI 2016 Workshop on Causation: Foundation to Application co-located with the 32nd Conference on Uncertainty in Artificial Intelligence (UAI 2016), 2016

SCENERY: A Web-Based Application for Network Reconstruction and Visualization of Cytometry Data.
Proceedings of the 10th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2016

Towards Robust and Versatile Causal Discovery for Business Applications.
Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2016

2015
Constraint-based causal discovery from multiple interventions over overlapping variable sets.
J. Mach. Learn. Res., 2015

Performance-Estimation Properties of Cross-Validation-Based Protocols with Simultaneous Hyper-Parameter Optimization.
Int. J. Artif. Intell. Tools, 2015

Bayesian Network Learning with Discrete Case-Control Data.
Proceedings of the Thirty-First Conference on Uncertainty in Artificial Intelligence, 2015

T-ReCS: Stable Selection of Dynamically Formed Groups of Features with Application to Prediction of Clinical Outcomes.
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

Discovering and Exploiting Deterministic Label Relationships in Multi-Label Learning.
Proceedings of the 21th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2015

2014
Discovering and Exploiting Entailment Relationships in Multi-Label Learning.
CoRR, 2014

Don't use a cannon to kill the ... miRNA mosquito.
Bioinform., 2014

Learning Neighborhoods of High Confidence in Constraint-Based Causal Discovery.
Proceedings of the Probabilistic Graphical Models - 7th European Workshop, 2014

2013
Scoring and Searching over Bayesian Networks with Causal and Associative Priors.
Proceedings of the Twenty-Ninth Conference on Uncertainty in Artificial Intelligence, 2013

A bioinformatics approach for investigating the determinants of Drosha processing.
Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013

2012
Towards Integrative Causal Analysis of Heterogeneous Data Sets and Studies.
J. Mach. Learn. Res., 2012

To feature space and back: Identifying top-weighted features in polynomial Support Vector Machine models.
Intell. Data Anal., 2012

Scoring Bayesian Networks with Informative, Causal and Associative Priors
CoRR, 2012

Learning from Mixture of Experimental Data: A Constraint-Based Approach.
Proceedings of the Artificial Intelligence: Theories and Applications, 2012

A Methodological Framework for Statistical Analysis of Social Text Streams.
Proceedings of the Information Search, Integration and Personalization, 2012

Incorporating Causal Prior Knowledge as Path-Constraints in Bayesian Networks and Maximal Ancestral Graphs.
Proceedings of the 29th International Conference on Machine Learning, 2012

SVM-based miRNA: MiRNA∗ duplex prediction.
Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012

2011
Risk Assessment Models for Diabetes Complications: A Survey of Available Online Tools.
Proceedings of the Wireless Mobile Communication and Healthcare, 2011

Information-Preserving Techniques Improve Chemosensitivity Prediction of Tumours Based on Expression Profiles.
Proceedings of the Engineering Applications of Neural Networks, 2011

A constraint-based approach to incorporate prior knowledge in causal models.
Proceedings of the 19th European Symposium on Artificial Neural Networks, 2011

A unified approach to estimation and control of the False Discovery Rate in Bayesian network skeleton identification.
Proceedings of the 19th European Symposium on Artificial Neural Networks, 2011

Using Constraint Optimization for Conflict Resolution and Detail Control in Activity Recognition.
Proceedings of the Ambient Intelligence, 2011

2010
Learning Causal Structure from Overlapping Variable Sets.
Proceedings of the Thirteenth International Conference on Artificial Intelligence and Statistics, 2010

Local Causal and Markov Blanket Induction for Causal Discovery and Feature Selection for Classification Part II: Analysis and Extensions.
J. Mach. Learn. Res., 2010

Local Causal and Markov Blanket Induction for Causal Discovery and Feature Selection for Classification Part I: Algorithms and Empirical Evaluation.
J. Mach. Learn. Res., 2010

Structure-based variable selection for survival data.
Bioinform., 2010

Permutation Testing Improves Bayesian Network Learning.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2010

2009
Multi-Source Causal Analysis: Learning Bayesian Networks from Multiple Datasets.
Proceedings of the Artificial Intelligence Applications and Innovations III, 2009

2008
A Strategy for Making Predictions Under Manipulation.
Proceedings of the Causation and Prediction Challenge at WCCI 2008, 2008

Bounding the False Discovery Rate in Local Bayesian Network Learning.
Proceedings of the Twenty-Third AAAI Conference on Artificial Intelligence, 2008

2007
Causal Data Mining in Bioinformatics.
ERCIM News, 2007

2006
The max-min hill-climbing Bayesian network structure learning algorithm.
Mach. Learn., 2006

Generating Realistic Large Bayesian Networks by Tiling.
Proceedings of the Nineteenth International Florida Artificial Intelligence Research Society Conference, 2006

2005
Research Paper: Text Categorization Models for High-Quality Article Retrieval in Internal Medicine.
J. Am. Medical Informatics Assoc., 2005

GEMS: A system for automated cancer diagnosis and biomarker discovery from microarray gene expression data.
Int. J. Medical Informatics, 2005

A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis.
Bioinform., 2005

Using the <i>GEMS</i> System for Supervised Analysis of Cancer Microarray Gene Expression Data.
Proceedings of the AMIA 2005, 2005

A Comparison of Bayesian Network Learning Algorithms from Continuous Data.
Proceedings of the AMIA 2005, 2005

Using the GEMS System for Cancer Diagnosis and Biomarker Discovery from Microarray Gene Expression Data.
Proceedings of the Proceedings, 2005

A Comparison of Novel and State-of-the-Art Polynomial Bayesian Network Learning Algorithms.
Proceedings of the Proceedings, 2005

2004
Methods for Multi-Category Cancer Diagnosis from Gene Expression Data: A Comprehensive Evaluation to Inform Decision Support System Development.
Proceedings of the MEDINFO 2004, 2004

A Novel Algorithm for Scalable and Accurate Bayesian Network Learning.
Proceedings of the MEDINFO 2004, 2004

A theoretical characterization of linear SVM-based feature selection.
Proceedings of the Machine Learning, 2004

2003
Autominder: an intelligent cognitive orthotic system for people with memory impairment.
Robotics Auton. Syst., 2003

CTP: A New Constraint-Based Formalism for Conditional, Temporal Planning.
Constraints An Int. J., 2003

Efficient solution techniques for disjunctive temporal reasoning problems.
Artif. Intell., 2003

Causal Explorer: A Causal Probabilistic Network Learning Toolkit for Biomedical Discovery.
Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, 2003

Why Classification Models Using Array Gene Expression Data Perform So Well: A Preliminary Investigation of Explanatory Factors.
Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, 2003

Time and sample efficient discovery of Markov blankets and direct causal relations.
Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Washington, DC, USA, August 24, 2003

Identifying Markov Blankets with Decision Tree Induction.
Proceedings of the 3rd IEEE International Conference on Data Mining (ICDM 2003), 2003

Algorithms for Large Scale Markov Blanket Discovery.
Proceedings of the Sixteenth International Florida Artificial Intelligence Research Society Conference, 2003

Machine Learning Models for Classification of Lung Cancer and Selection of Genomic Markers Using Array Gene Expression Data.
Proceedings of the Sixteenth International Florida Artificial Intelligence Research Society Conference, 2003

HITON: A Novel Markov Blanket Algorithm for Optimal Variable Selection.
Proceedings of the AMIA 2003, 2003

Towards Principled Feature Selection: Relevancy, Filters and Wrappers.
Proceedings of the Ninth International Workshop on Artificial Intelligence and Statistics, 2003

2002
A Probabilistic Approach to Robust Execution of Temporal Plans with Uncertainty.
Proceedings of the Methods and Applications of Artificial Intelligence, 2002

A Scheme for Integrating e-Services in Establishing Virtual Enterprises.
Proceedings of the 12th International Workshop on Research Issues in Data Engineering: Engineering E-Commerce/E-Business Systems, 2002

2001
Execution-Time Plan Management for a Cognitive Orthotic System.
Proceedings of the Advances in Plan-Based Control of Robotic Agents, 2001

2000
Merging Plans with Quantitative Temporal Constraints, Temporally Extended Actions, and Conditional Branches.
Proceedings of the Fifth International Conference on Artificial Intelligence Planning Systems, 2000

1998
The potential for the evolution of co-operation among web agents.
Int. J. Hum. Comput. Stud., 1998

Reformulating Temporal Plans for Efficient Execution.
Proceedings of the Sixth International Conference on Principles of Knowledge Representation and Reasoning (KR'98), 1998

Fast Transformation of Temporal Plans for Efficient Execution.
Proceedings of the Fifteenth National Conference on Artificial Intelligence and Tenth Innovative Applications of Artificial Intelligence Conference, 1998


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