Irena Roterman-Konieczna

Orcid: 0000-0003-3652-9099

According to our database1, Irena Roterman-Konieczna authored at least 93 papers between 1995 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Role of environmental specificity in CASP results.
BMC Bioinform., December, 2023

Ab initio protein structure prediction: the necessary presence of external force field as it is delivered by Hsp40 chaperone.
BMC Bioinform., December, 2023

Protein Is an Intelligent Micelle.
Entropy, June, 2023

2022
Lightweight ProteinUnet2 network for protein secondary structure prediction: a step towards proper evaluation.
BMC Bioinform., 2022

2021
ProteinUnet - An efficient alternative to SPIDER3-single for sequence-based prediction of protein secondary structures.
J. Comput. Chem., 2021

Divergence Entropy-Based Evaluation of Hydrophobic Core in Aggressive and Resistant Forms of Transthyretin.
Entropy, 2021

2020
Alternative Hydrophobic Core in Proteins - The Effect of Specific Synergy.
Symmetry, 2020

The Status of Edge Strands in Ferredoxin-Like Fold.
Symmetry, 2020

System to simulate the activity of living organism - construction of proteome.
J. Comput. Sci., 2020

Protein folding vs. COVID-19 and the Mediterranean diet.
Bio Algorithms Med Syst., 2020

2019
Machine Learning Methods for the Protein Fold Recognition Problem.
Proceedings of the Machine Learning Paradigms - Advances in Data Analytics, 2019

Symmetry and Dissymmetry in Protein Structure - System-Coding Its Biological Specificity.
Symmetry, 2019

Structural analysis of the Aβ(11-42) amyloid fibril based on hydrophobicity distribution.
J. Comput. Aided Mol. Des., 2019

Backbone dihedral angles prediction servers for protein early-stage structure prediction.
Bio Algorithms Med Syst., 2019

The living organism: evolutionary design or an accident.
Bio Algorithms Med Syst., 2019

Personalized precision medicine.
Bio Algorithms Med Syst., 2019

Aggregation-promoting conditions necessary to create the complexes by acylphosphatase from the hyperthermophile Sulfolobus solfataricus.
Bio Algorithms Med Syst., 2019

2018
Comparison of the structure of Aβ(1-40) amyloid with the one in complex with polyphenol ε-viniferin glucoside (EVG).
Bio Algorithms Med Syst., 2018

Chromatin 3D - will it make understanding of cancer transformation finally possible?
Bio Algorithms Med Syst., 2018

Fragment Aβ(18-41) presented within the CDR3 loop region of a shark immunoglobulin new antigen receptor single-variable domain antibody analyzed based on the fuzzy oil drop model.
Bio Algorithms Med Syst., 2018

2017
Application of the Fuzzy Oil Drop Model Describes Amyloid as a Ribbonlike Micelle.
Entropy, 2017

Chain-chain complexation and heme binding in haemoglobin with respect to the hydrophobic core structure.
Bio Algorithms Med Syst., 2017

Genetic traces of never born proteins.
Bio Algorithms Med Syst., 2017

Role of the hydrophobic core in cytoskeleton protein: cardiac myosin binding protein C.
Bio Algorithms Med Syst., 2017

Mechanism of ligand binding - PDZ domain taken as example.
Bio Algorithms Med Syst., 2017

The variability of protein structure with respect to the hydrophobic core.
Bio Algorithms Med Syst., 2017

Structure of hydrophobic core in plant carboxylesterase.
Bio Algorithms Med Syst., 2017

2016
Influence of the Aqueous Environment on Protein Structure - A Plausible Hypothesis Concerning the Mechanism of Amyloidogenesis.
Entropy, 2016

Role of Disulfide Bonds in Stabilizing the Conformation of Selected Enzymes - An Approach Based on Divergence Entropy Applied to the Structure of Hydrophobic Core in Proteins.
Entropy, 2016

Dissimilar sequence: similar structure of proteins.
Bio Algorithms Med Syst., 2016

2015
Statistical dictionaries for hypothetical in silico model of the early-stage intermediate in protein folding.
J. Comput. Aided Mol. Des., 2015

Application of Divergence Entropy to Characterize the Structure of the Hydrophobic Core in DNA Interacting Proteins.
Entropy, 2015

Hydrophobic core structure of macromomycin - the apoprotein of the antitumor antibiotic auromomycin - fuzzy oil drop model applied.
Bio Algorithms Med Syst., 2015

A method of predicting the secondary protein structure based on dictionaries.
Bio Algorithms Med Syst., 2015

Application of divergence entropy to characterize the structure of lipid-binding proteins.
Bio Algorithms Med Syst., 2015

The use of Titan yellow dye as a metal ion binding marker for studies on the formation of specific complexes by supramolecular Congo red.
Bio Algorithms Med Syst., 2015

2014
Speaker identification based on artificial neural networks. Case study: the Polish vowel (pilot study).
Bio Algorithms Med Syst., 2014

Attempt at a systemic outlook on aging and carcinogenesis.
Bio Algorithms Med Syst., 2014

Involvement of medical experts in legal proceedings: an e-learning approach.
Bio Algorithms Med Syst., 2014

2013
Forensic voice comparison by means of artificial neural networks.
Bio Algorithms Med Syst., 2013

Structural role of exon-coded fragments in proteins.
Bio Algorithms Med Syst., 2013

Structural role of exons in hemoglobin.
Bio Algorithms Med Syst., 2013

A serious game - a new training addressing particularly prospective memory in the elderly.
Bio Algorithms Med Syst., 2013

2012
An improved protein fold recognition with support vector machines.
Expert Syst. J. Knowl. Eng., 2012

BIOLOGICAL CLOCK - Is the Need for a Clock a Common Issue for Cells and Computers?
Bio Algorithms Med Syst., 2012

Measurement of Hydrophobicity Distribution in Proteins - Non-redundant Protein Data Bank.
Bio Algorithms Med Syst., 2012

Measurement of Hydrophobicity Distribution in Proteins - Complete Redundant Protein Data Bank.
Bio Algorithms Med Syst., 2012

Structural Analysis of the Lactoferrin Iron Binding Pockets.
Bio Algorithms Med Syst., 2012

Technical Solutions for Bio-Measurements.
Bio Algorithms Med Syst., 2012

Stability of Two Natural Homologous Proteins with Different Folds.
Bio Algorithms Med Syst., 2012

Computations of Protein Hydrophobicity Profile as Virtual Experiment in Gridspace Virtual Laboratory.
Bio Algorithms Med Syst., 2012

Examining Protein Folding Process Simulation and Searching for Common Structure Motifs in a Protein Family as Experiments in the GridSpace2 Virtual Laboratory.
Proceedings of the Building a National Distributed e-Infrastructure - PL-Grid, 2012

2011
Catalytic residues in hydrolases: analysis of methods designed for ligand-binding site prediction.
J. Comput. Aided Mol. Des., 2011

Ab initio protein structure prediction - the hydrophobicity distribution analysis.
Bio Algorithms Med Syst., 2011

2010
Editorial note.
Bio Algorithms Med Syst., 2010

Automatic Classification of Protein Structures based on Genetic Algorithm alignment of the Hydrophobicity Difference Profiles obtained from the Fuzzy Oil Drop Model.
Bio Algorithms Med Syst., 2010

In silico "Game" between the patient and his/her disease.
Bio Algorithms Med Syst., 2010

Internal force field in protein molecule.
Bio Algorithms Med Syst., 2010

Forty years of medical informatics in Medical Academy (currently) Jagiellonian University - Medical College (JU CM).
Bio Algorithms Med Syst., 2010

Identification of protein-protein complexation area.
Bio Algorithms Med Syst., 2010

An Efficient Multi-class Support Vector Machine Classifier for Protein Fold Recognition.
Proceedings of the Advances in Bioinformatics, 2010

2009
Structural Entropy to Characterize Small Proteins (70 aa) and Their Interactions.
Entropy, 2009

The XV century patients (as presented on Wit Stwosz altar) diagnozed.
Bio Algorithms Med Syst., 2009

Chemical pathways - visualisation of classical analytical procedures in chemistry by the use of flow charts.
Bio Algorithms Med Syst., 2009

Unfolding simulation to verify the concept of limited conformational sub-space for early-stage intermediate.
Bio Algorithms Med Syst., 2009

Male portrait head.
Bio Algorithms Med Syst., 2009

2008
Advanced measurement of saccadic eye movements - study of invariable and significant physiological features.
Bio Algorithms Med Syst., 2008

The influence of coffee on an eyeball movement.
Bio Algorithms Med Syst., 2008

Association between the N-acetylation genetic polymorphism and aspirin-induced urticartia.
Bio Algorithms Med Syst., 2008

Ligands database.
Bio Algorithms Med Syst., 2008

2007
Prediction of Functional Sites Based on the Fuzzy Oil Drop Model.
PLoS Comput. Biol., 2007

Is the protein folding an aim-oriented process? Human haemoglobin as example.
Int. J. Bioinform. Res. Appl., 2007

Mathematical Oncology - What is it?
Bio Algorithms Med Syst., 2007

Massive identification of similarities in DNA materials organized in Grid environment.
Bio Algorithms Med Syst., 2007

An approach to protein folding on the grid - EUChinaGrid experience.
Bio Algorithms Med Syst., 2007

2006
Gauss-Function-Based Model of Hydrophobicity Density in Proteins.
Silico Biol., 2006

Sequence-Structure-Function Relation Characterized in silico.
Silico Biol., 2006

Hydrophobic collapse in (<i>in silico</i>) protein folding.
Comput. Biol. Chem., 2006

Application of cryptography in cardiologic teleconsultation.
Bio Algorithms Med Syst., 2006

Protein complexes with supramolecular ligands formed and revealed in two-dimensional electrophoresis. The search for computer analysis of results.
Bio Algorithms Med Syst., 2006

Grid systems and their applications to biomedical science.
Bio Algorithms Med Syst., 2006

A multi-path computer-based examination system for students of medicine.
Bio Algorithms Med Syst., 2006

E-learning as a new tool in medicine teaching on the example of an introductory statistics course.
Bio Algorithms Med Syst., 2006

Specific supramolecular ligands with proteins. Possible practical application.
Bio Algorithms Med Syst., 2006

The ligand database server.
Bio Algorithms Med Syst., 2006

2004
Force-field parametrization and molecular dynamics simulations of Congo red.
J. Comput. Aided Mol. Des., 2004

SPI - Structure predictability index for protein sequences.
Silico Biol., 2004

Limited conformational space for early-stage protein folding simulation.
Bioinform., 2004

2003
Search for structural similarity in proteins.
Bioinform., 2003

2000
Why do Congo Red, Evans Blue, and Trypan Blue differ in their complexation properties?
J. Comput. Chem., 2000

The Conformational Characteristics of Congo Red, Evans Blue and Trypan Blue.
Comput. Chem., 2000

1998
Congo Red Bound to -1-Proteinase Inhibitor As a Model of Supramolecular Ligand and Protein Complex.
Comput. Chem., 1998

1995
Geometrical Analysis of Structural Changes in Immunoglobulin Domains' Transition From Native to Molten State.
Comput. Chem., 1995


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