Jacob D. Durrant

Orcid: 0000-0002-5808-4097

According to our database1, Jacob D. Durrant authored at least 27 papers between 2010 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

Online presence:

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Bibliography

2022
Novel mutation in hexokinase 2 confers resistance to 2-deoxyglucose by altering protein dynamics.
PLoS Comput. Biol., 2022

BINANA 2: Characterizing Receptor/Ligand Interactions in Python and JavaScript.
J. Chem. Inf. Model., 2022

FPocketWeb: protein pocket hunting in a web browser.
J. Cheminformatics, 2022

Prot2Prot: a deep learning model for rapid, photorealistic macromolecular visualization.
J. Comput. Aided Mol. Des., 2022

2021
DeepFrag: An Open-Source Browser App for Deep-Learning Lead Optimization.
J. Chem. Inf. Model., 2021

2020
ProteinVR: Web-based molecular visualization in virtual reality.
PLoS Comput. Biol., 2020

AutoGrow4: an open-source genetic algorithm for de novo drug design and lead optimization.
J. Cheminformatics, 2020

LigGrep: a tool for filtering docked poses to improve virtual-screening hit rates.
J. Cheminformatics, 2020

Webina: an open-source library and web app that runs AutoDock Vina entirely in the web browser.
Bioinform., 2020

2019
PCAViz: An Open-Source Python/JavaScript Toolkit for Visualizing Molecular Dynamics Simulations in the Web Browser.
J. Chem. Inf. Model., 2019

Gypsum-DL: an open-source program for preparing small-molecule libraries for structure-based virtual screening.
J. Cheminformatics, 2019

Dimorphite-DL: an open-source program for enumerating the ionization states of drug-like small molecules.
J. Cheminformatics, 2019

BlendMol: advanced macromolecular visualization in Blender.
Bioinform., 2019

2018
Two inhibitors of yeast plasma membrane ATPase 1 (ScPma1p): toward the development of novel antifungal therapies.
J. Cheminformatics, 2018

Pyrite: A blender plugin for visualizing molecular dynamics simulations using industry-standard rendering techniques.
J. Comput. Chem., 2018

2017
Scoria: a Python module for manipulating 3D molecular data.
J. Cheminformatics, 2017

2015
A Virtual Screening Approach For Identifying Plants with Anti H5N1 Neuraminidase Activity.
J. Chem. Inf. Model., 2015

Neural-Network Scoring Functions Identify Structurally Novel Estrogen-Receptor Ligands.
J. Chem. Inf. Model., 2015

2014
LipidWrapper: An Algorithm for Generating Large-Scale Membrane Models of Arbitrary Geometry.
PLoS Comput. Biol., 2014

WebChem Viewer: a tool for the easy dissemination of chemical and structural data sets.
BMC Bioinform., 2014

2013
Comparing Neural-Network Scoring Functions and the State of the Art: Applications to Common Library Screening.
J. Chem. Inf. Model., 2013

2012
AutoClickChem: Click Chemistry <i>in Silico</i>.
PLoS Comput. Biol., 2012

2011
NNScore 2.0: A Neural-Network Receptor-Ligand Scoring Function.
J. Chem. Inf. Model., 2011

CrystalDock: A Novel Approach to Fragment-Based Drug Design.
J. Chem. Inf. Model., 2011

2010
A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology.
PLoS Comput. Biol., 2010

NNScore: A Neural-Network-Based Scoring Function for the Characterization of Protein-Ligand Complexes.
J. Chem. Inf. Model., 2010

Potential drug-like inhibitors of Group 1 influenza neuraminidase identified through computer-aided drug design.
Comput. Biol. Chem., 2010


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