Jesse A. Gillis

Orcid: 0000-0002-0936-9774

According to our database1, Jesse A. Gillis authored at least 19 papers between 2005 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Bibliography

2024
Improving replicability in single-cell RNA-Seq cell type discovery with Dune.
BMC Bioinform., December, 2024

2023
Learning single-cell chromatin accessibility profiles using meta-analytic marker genes.
Briefings Bioinform., January, 2023

2022
Defining the extent of gene function using ROC curvature.
Bioinform., December, 2022

2020
CoCoCoNet: conserved and comparative co-expression across a diverse set of species.
Nucleic Acids Res., 2020

2017
EGAD: ultra-fast functional analysis of gene networks.
Bioinform., 2017

2016
AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression.
PLoS Comput. Biol., 2016

Positive and negative forms of replicability in gene network analysis.
Bioinform., 2016

2015
Measuring the wisdom of the crowds in network-based gene function inference.
Bioinform., 2015

Guidance for RNA-seq co-expression network construction and analysis: safety in numbers.
Bioinform., 2015

2013
Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA).
BMC Bioinform., 2013

Assessing identity, redundancy and confounds in Gene Ontology annotations over time.
Bioinform., 2013

2012
"Guilt by Association" Is the Exception Rather Than the Rule in Gene Networks.
PLoS Comput. Biol., 2012

Progress and challenges in the computational prediction of gene function using networks.
F1000Research, 2012

Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data.
Bioinform., 2012

2011
The role of indirect connections in gene networks in predicting function.
Bioinform., 2011

2010
Spatial coherence and stationarity of local field potentials in an isolated whole hippocampal preparation <i>in vitro</i>.
J. Comput. Neurosci., 2010

2009
A methodology for the analysis of differential coexpression across the human lifespan.
BMC Bioinform., 2009

2006
Deficiencies in traditional measures of in vitro hippocampal rhythms.
Neurocomputing, 2006

2005
Characterizing in vitro hippocampal ripples using time-frequency analysis.
Neurocomputing, 2005


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