Jinn-Moon Yang
Orcid: 0000-0002-3205-4391
According to our database1,
Jinn-Moon Yang
authored at least 75 papers
between 1996 and 2022.
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Bibliography
2022
Identification of pan-kinase-family inhibitors using graph convolutional networks to reveal family-sensitive pre-moieties.
BMC Bioinform., April, 2022
BMC Bioinform., 2022
Discovery of moiety preference by Shapley value in protein kinase family using random forest models.
BMC Bioinform., 2022
Exploring kinase family inhibitors and their moiety preferences using deep SHapley additive exPlanations.
BMC Bioinform., 2022
2021
Pharmacophore anchor models of ATAT1 to discover potential inhibitors and lead optimization.
Comput. Biol. Chem., 2021
BMC Bioinform., 2021
2020
Proceedings of the 20th IEEE International Conference on Bioinformatics and Bioengineering, 2020
Configurational Differences and Binding Mechanisms of Interleukin-1 Receptor-Associated Kinase 1.
Proceedings of the 20th IEEE International Conference on Bioinformatics and Bioengineering, 2020
2019
Deep learning with evolutionary and genomic profiles for identifying cancer subtypes.
J. Bioinform. Comput. Biol., 2019
J. Bioinform. Comput. Biol., 2019
2018
A homologous mapping method for three-dimensional reconstruction of protein networks reveals disease-associated mutations.
BMC Syst. Biol., 2018
Deep Learning with Evolutionary and Genomic Profiles for Identifying Cancer Subtypes.
Proceedings of the 18th IEEE International Conference on Bioinformatics and Bioengineering, 2018
Proceedings of the 18th IEEE International Conference on Bioinformatics and Bioengineering, 2018
2017
BMC Genom., 2017
Pharmacophore anchor models of flaviviral NS3 proteases lead to drug repurposing for DENV infection.
BMC Bioinform., 2017
2016
Finding Influential Genes Using Gene Expression Data and Boolean Models of Metabolic Networks.
Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, 2016
2013
Pathway-based Screening Strategy for Multitarget Inhibitors of Diverse Proteins in Metabolic Pathways.
PLoS Comput. Biol., 2013
KIDFamMap: a database of kinase-inhibitor-disease family maps for kinase inhibitor selectivity and binding mechanisms.
Nucleic Acids Res., 2013
Moiety-Linkage Map Reveals Selective Nonbisphosphonate Inhibitors of Human Geranylgeranyl Diphosphate Synthase.
J. Chem. Inf. Model., 2013
Template-based scoring functions for visualising biological insights of H-2K<sup>b</sup>-peptide-TCR complexes.
Int. J. Data Min. Bioinform., 2013
Inferring homologous protein-protein interactions through pair position specific scoring matrix.
BMC Bioinform., 2013
2012
MoNetFamily: a web server to infer homologous modules and module-module interaction networks in vertebrates.
Nucleic Acids Res., 2012
GemAffinity: a scoring function for predicting binding affinity and Virtual Screening.
Int. J. Data Min. Bioinform., 2012
2011
PAComplex: a web server to infer peptide antigen families and binding models from TCR-pMHC complexes.
Nucleic Acids Res., 2011
LigSeeSVM: Ligand-based virtual Screening using Support Vector Machines and data fusion.
Int. J. Comput. Biol. Drug Des., 2011
BMC Bioinform., 2011
iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis.
BMC Bioinform., 2011
2010
Nucleic Acids Res., 2010
SiMMap: a web server for inferring site-moiety map to recognize interaction preferences between protein pockets and compound moieties.
Nucleic Acids Res., 2010
Atrippi: an Atom-Residue Preference Scoring Function for protein-protein Interactions.
Int. J. Artif. Intell. Tools, 2010
Template-based scoring functions for visualizing biological insights of H-2K<sup>b</sup>-peptide-TCR complexes.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010
2009
PPISearch: a web server for searching homologous protein-protein interactions across multiple species.
Nucleic Acids Res., 2009
Co-evolution positions and rules for antigenic variants of human influenza A/H3N2 viruses.
BMC Bioinform., 2009
BMC Bioinform., 2009
3D-interologs: A Protein-Protein Interacting Evolution Database across Multiple Species.
Proceedings of the International Joint Conferences on Bioinformatics, 2009
ATRIPPI: An Atom-residue Preference Scoring Function for Protein-protein Interactions.
Proceedings of the Ninth IEEE International Conference on Bioinformatics and Bioengineering, 2009
2008
Soft energy function and generic evolutionary method for discriminating native from nonnative protein conformations.
J. Comput. Chem., 2008
BMC Bioinform., 2008
Evolutionary Conservation and Interacting Preference for Identifying Protein-DNA Interactions.
Proceedings of the International Multisymposiums on Computer and Computational Sciences, 2008
Proceedings of the ECCB'08 Proceedings, 2008
2007
fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies.
Nucleic Acids Res., 2007
Nucleic Acids Res., 2007
Proceedings of the Proceeding of the Second International Multi-Symposium of Computer and Computational Sciences (IMSCCS 2007), 2007
Proceedings of the Evolutionary Computation, 2007
2006
2005
J. Chem. Inf. Model., 2005
GEMPLS: A New QSAR Method Combining Generic Evolutionary Method and Partial Least Squares.
Proceedings of the Applications of Evolutionary Computing, 2005
GEMSCORE: A New Empirical Energy Function for Protein Folding.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005
2004
IEEE Trans. Syst. Man Cybern. Part B, 2004
IEEE Trans. Inf. Technol. Biomed., 2004
Soft Comput., 2004
Development and evaluation of a generic evolutionary method for protein-ligand docking.
J. Comput. Chem., 2004
An Evolutionary Approach with Pharmacophore-Based Scoring Functions for Virtual Database Screening.
Proceedings of the Genetic and Evolutionary Computation, 2004
Comparative Molecular Binding Energy Analysis of HIV-1 Protease Inhibitors Using Genetic Algorithm-Based Partial Least Squares Method.
Proceedings of the Genetic and Evolutionary Computation, 2004
A pharmacophore-based evolutionary approach for screening estrogen receptor antagonists.
Proceedings of the IEEE Congress on Evolutionary Computation, 2004
2003
J. Inf. Sci. Eng., 2003
Proceedings of the Genetic and Evolutionary Computation, 2003
2002
Applying Genetic Algorithms To Finding The Optimal Gene Order In Displaying The Microarray Data.
Proceedings of the GECCO 2002: Proceedings of the Genetic and Evolutionary Computation Conference, 2002
Proceedings of the 2002 Congress on Evolutionary Computation, 2002
2001
Neural Comput. Appl., 2001
Evol. Comput., 2001
Integrating adaptive mutations and family competition with differential evolution for flexible ligand docking.
Proceedings of the 2001 Congress on Evolutionary Computation, 2001
2000
A family competition evolutionary algorithm for automated docking of flexible ligands to proteins.
IEEE Trans. Inf. Technol. Biomed., 2000
Integrating adaptive mutations and family competition into genetic algorithms as function optimizer.
Soft Comput., 2000
J. Comput. Chem., 2000
A Genetic Algorithm with Adaptive Mutations and Family Competition for Training Neural Networks.
Int. J. Neural Syst., 2000
An Evolutionary Algorithms to Training Neural Networks for a Two-Spiral Problem.
Proceedings of the Genetic and Evolutionary Computation Conference (GECCO '00), 2000
A Genetic Algorithm for Physical Mapping Problems.
Proceedings of the Genetic and Evolutionary Computation Conference (GECCO '00), 2000
Proceedings of the 2000 Congress on Evolutionary Computation, 2000
1999
Incorporation family competition into Gaussian and Cauchy mutations to training neural networks using an evolutionary algorithm.
Proceedings of the 1999 Congress on Evolutionary Computation, 1999
1998
Proceedings of the Parallel Problem Solving from Nature, 1998
Proceedings of the IEEE International Conference on Robotics and Automation, 1998
1997
A Continuous Genetic Algorithm for Global Optimization.
Proceedings of the 7th International Conference on Genetic Algorithms, 1997
Proceedings of the Evolutionary Programming VI, 6th International Conference, 1997
1996
Proceedings of 1996 IEEE International Conference on Evolutionary Computation, 1996