Jinn-Moon Yang

According to our database1, Jinn-Moon Yang authored at least 62 papers between 1996 and 2019.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of two.



In proceedings 
PhD thesis 


On csauthors.net:


Deep learning with evolutionary and genomic profiles for identifying cancer subtypes.
J. Bioinformatics and Computational Biology, 2019

Identification of the PCA29 gene signature as a predictor in prostate cancer.
J. Bioinformatics and Computational Biology, 2019

A homologous mapping method for three-dimensional reconstruction of protein networks reveals disease-associated mutations.
BMC Syst. Biol., 2018

Deep Learning with Evolutionary and Genomic Profiles for Identifying Cancer Subtypes.
Proceedings of the 18th IEEE International Conference on Bioinformatics and Bioengineering, 2018

Identification of the PCa28 Gene Signature as a Predictor in Prostate Cancer.
Proceedings of the 18th IEEE International Conference on Bioinformatics and Bioengineering, 2018

Pharmacophore anchor models of flaviviral NS3 proteases lead to drug repurposing for DENV infection.
BMC Bioinform., 2017

Finding Influential Genes Using Gene Expression Data and Boolean Models of Metabolic Networks.
Proceedings of the 16th IEEE International Conference on Bioinformatics and Bioengineering, 2016

Pathway-based Screening Strategy for Multitarget Inhibitors of Diverse Proteins in Metabolic Pathways.
PLoS Computational Biology, 2013

KIDFamMap: a database of kinase-inhibitor-disease family maps for kinase inhibitor selectivity and binding mechanisms.
Nucleic Acids Res., 2013

Moiety-Linkage Map Reveals Selective Nonbisphosphonate Inhibitors of Human Geranylgeranyl Diphosphate Synthase.
J. Chem. Inf. Model., 2013

Template-based scoring functions for visualising biological insights of H-2Kb-peptide-TCR complexes.
Int. J. Data Min. Bioinform., 2013

Inferring homologous protein-protein interactions through pair position specific scoring matrix.
BMC Bioinform., 2013

MoNetFamily: a web server to infer homologous modules and module-module interaction networks in vertebrates.
Nucleic Acids Res., 2012

GemAffinity: a scoring function for predicting binding affinity and Virtual Screening.
Int. J. Data Min. Bioinform., 2012

PAComplex: a web server to infer peptide antigen families and binding models from TCR-pMHC complexes.
Nucleic Acids Res., 2011

LigSeeSVM: Ligand-based virtual Screening using Support Vector Machines and data fusion.
Int. J. Comput. Biol. Drug Des., 2011

Changed epitopes drive the antigenic drift for influenza A (H3N2) viruses.
BMC Bioinform., 2011

iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis.
BMC Bioinform., 2011

PCFamily: a web server for searching homologous protein complexes.
Nucleic Acids Res., 2010

SiMMap: a web server for inferring site-moiety map to recognize interaction preferences between protein pockets and compound moieties.
Nucleic Acids Res., 2010

Atrippi: an Atom-Residue Preference Scoring Function for protein-protein Interactions.
Int. J. Artif. Intell. Tools, 2010

Template-based scoring functions for visualizing biological insights of H-2Kb-peptide-TCR complexes.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

PPISearch: a web server for searching homologous protein-protein interactions across multiple species.
Nucleic Acids Res., 2009

Co-evolution positions and rules for antigenic variants of human influenza A/H3N2 viruses.
BMC Bioinform., 2009

(PS)2-v2: template-based protein structure prediction server.
BMC Bioinform., 2009

3D-interologs: A Protein-Protein Interacting Evolution Database across Multiple Species.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

ATRIPPI: An Atom-residue Preference Scoring Function for Protein-protein Interactions.
Proceedings of the Ninth IEEE International Conference on Bioinformatics and Bioengineering, 2009

Soft energy function and generic evolutionary method for discriminating native from nonnative protein conformations.
J. Comput. Chem., 2008

Evolutionary conservation of DNA-contact residues in DNA-binding domains.
BMC Bioinform., 2008

Evolutionary Conservation and Interacting Preference for Identifying Protein-DNA Interactions.
Proceedings of the International Multisymposiums on Computer and Computational Sciences, 2008

PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database.
Proceedings of the ECCB'08 Proceedings, 2008

fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies.
Nucleic Acids Res., 2007

3D-partner: a web server to infer interacting partners and binding models.
Nucleic Acids Res., 2007

Evolutionary Conservation of DNA-Contact residues in DNA-binding Domains.
Proceedings of the Proceeding of the Second International Multi-Symposium of Computer and Computational Sciences (IMSCCS 2007), 2007

A Gaussian Evolutionary Method for Predicting Protein-Protein Interaction Sites.
Proceedings of the Evolutionary Computation, 2007

(PS)2: protein structure prediction server.
Nucleic Acids Res., 2006

Consensus Scoring Criteria for Improving Enrichment in Virtual Screening.
J. Chem. Inf. Model., 2005

GEMPLS: A New QSAR Method Combining Generic Evolutionary Method and Partial Least Squares.
Proceedings of the Applications of Evolutionary Computing, 2005

GEMSCORE: A New Empirical Energy Function for Protein Folding.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

An evolutionary algorithm for large traveling salesman problems.
IEEE Trans. Syst. Man Cybern. Part B, 2004

An Evolutionary Approach for Gene Expression Patterns.
IEEE Trans. Inf. Technol. Biomed., 2004

Some issues of designing genetic algorithms for traveling salesman problems.
Soft Comput., 2004

Development and evaluation of a generic evolutionary method for protein-ligand docking.
J. Comput. Chem., 2004

An Evolutionary Approach with Pharmacophore-Based Scoring Functions for Virtual Database Screening.
Proceedings of the Genetic and Evolutionary Computation, 2004

Comparative Molecular Binding Energy Analysis of HIV-1 Protease Inhibitors Using Genetic Algorithm-Based Partial Least Squares Method.
Proceedings of the Genetic and Evolutionary Computation, 2004

A pharmacophore-based evolutionary approach for screening estrogen receptor antagonists.
Proceedings of the IEEE Congress on Evolutionary Computation, 2004

Finding Regularity in Various Types of Secondary Protein Structures.
J. Inf. Sci. Eng., 2003

An Evolutionary Approach for Molecular Docking.
Proceedings of the Genetic and Evolutionary Computation, 2003

Applying Genetic Algorithms To Finding The Optimal Gene Order In Displaying The Microarray Data.
Proceedings of the GECCO 2002: Proceedings of the Genetic and Evolutionary Computation Conference, 2002

A Robust Evolutionary Algorithm for Training Neural Networks.
Neural Computing and Applications, 2001

Optical Coating Designs Using the Family Competition Evolutionary Algorithm.
Evol. Comput., 2001

A family competition evolutionary algorithm for automated docking of flexible ligands to proteins.
IEEE Trans. Inf. Technol. Biomed., 2000

Integrating adaptive mutations and family competition into genetic algorithms as function optimizer.
Soft Comput., 2000

Flexible ligand docking using a robust evolutionary algorithm.
J. Comput. Chem., 2000

A Genetic Algorithm with Adaptive Mutations and Family Competition for Training Neural Networks.
Int. J. Neural Syst., 2000

An Evolutionary Algorithms to Training Neural Networks for a Two-Spiral Problem.
Proceedings of the Genetic and Evolutionary Computation Conference (GECCO '00), 2000

A Genetic Algorithm for Physical Mapping Problems.
Proceedings of the Genetic and Evolutionary Computation Conference (GECCO '00), 2000

An Evolutionary Algorithm for Synthesizing Optical Thin-Film Designs.
Proceedings of the Parallel Problem Solving from Nature, 1998

A New Evolutionary Approach to Developing Neural Autonomous Agents.
Proceedings of the IEEE International Conference on Robotics and Automation, 1998

A Continuous Genetic Algorithm for Global Optimization.
Proceedings of the 7th International Conference on Genetic Algorithms, 1997

Applying Family Competition to Evolution Strategies for Constrained Optimization.
Proceedings of the Evolutionary Programming VI, 6th International Conference, 1997

A Combined Evolutionary Algorithm for Real Parameters Optimization.
Proceedings of 1996 IEEE International Conference on Evolutionary Computation, 1996