Joana P. Gonçalves

According to our database, Joana P. Gonçalves authored at least 11 papers between 2010 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

Overcoming selection bias in synthetic lethality prediction.

Colm Seale, Yasin Tepeli, Joana P. Gonçalves

Bioinform., 2022

2014

LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification.

Joana P. Gonçalves, Sara C. Madeira

IEEE ACM Trans. Comput. Biol. Bioinform., 2014

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in <i>Saccharomyces cerevisiae</i>.

Miguel Cacho Teixeira, Pedro Tiago Monteiro, Joana Fernandes Guerreiro, Joana Pinho Gonçalves, Nuno Pereira Mira, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Margarida Palma, Catarina Costa, Alexandre Paulo Francisco, Sara Cordeiro Madeira, Arlindo Limede Oliveira, Ana Teresa Freitas, Isabel Sá-Correia

Nucleic Acids Res., 2014

Predicting disease associations via biological network analysis.

Kai Sun, Joana P. Gonçalves, Chris Larminie, Natasa Przulj

BMC Bioinform., 2014

2013

Heuristic approaches for time-lagged biclustering.

Joana P. Gonçalves, Sara C. Madeira

Proceedings of the 12th International Workshop on Data Mining in Bioinformatics, 2013

2012

AliBiMotif: Integrating alignment and biclustering to unravel transcription factor binding sites in DNA sequences.

Joana P. Gonçalves, Yves Moreau, Sara C. Madeira

Int. J. Data Min. Bioinform., 2012

2011

PINTA: a web server for network-based gene prioritization from expression data.

Daniela Nitsch, Léon-Charles Tranchevent, Joana P. Gonçalves, Josef Korbinian Vogt, Sara C. Madeira, Yves Moreau

Nucleic Acids Res., 2011

TFRank: network-based prioritization of regulatory associations underlying transcriptional responses.

Joana P. Gonçalves, Alexandre P. Francisco, Nuno P. Mira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira, Sara C. Madeira

Bioinform., 2011

2010

Candidate gene prioritization by network analysis of differential expression using machine learning approaches.

Daniela Nitsch, Joana P. Gonçalves, Fabian Ojeda, Bart De Moor, Yves Moreau

BMC Bioinform., 2010

Network-Based Disease Candidate Gene Prioritization: Towards Global Diffusion in Heterogeneous Association Networks.

Joana P. Gonçalves, Sara C. Madeira, Yves Moreau

Proceedings of the 1st Workshop on Dynamic Networks and Knowledge Discovery, 2010

<i>e</i>-BiMotif: Combining Sequence Alignment and Biclustering to Unravel Structured Motifs.

Joana P. Gonçalves, Sara C. Madeira

Proceedings of the Advances in Bioinformatics, 2010