Jon Pey

According to our database, Jon Pey authored at least 13 papers between 2011 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

ELIMINATOR: essentiality analysis using multisystem networks and integer programming.

Asier Antoranz, María Ortiz, Jon Pey

BMC Bioinform., 2022

2016

Direct calculation of minimal cut sets involving a specific reaction knock-out.

Luis Tobalina, Jon Pey, Francisco J. Planes

Bioinform., 2016

2015

Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data.

Luis Tobalina, Rafael Bargiela, Jon Pey, Florian-Alexander Herbst, Iván Lores, David Rojo, Coral Barbas, Ana I. Peláez, Jesús Sánchez, Martin von Bergen, Jana Seifert, Manuel Ferrer, Francisco J. Planes

Bioinform., 2015

TreeEFM: calculating elementary flux modes using linear optimization in a tree-based algorithm.

Jon Pey, Juan A. Villar, Luis Tobalina, Alberto Rezola, José Manuel García Carrasco, John E. Beasley, Francisco J. Planes

Bioinform., 2015

Advances in network-based metabolic pathway analysis and gene expression data integration.

Alberto Rezola, Jon Pey, Luis Tobalina, Ángel Rubio, John E. Beasley, Francisco J. Planes

Briefings Bioinform., 2015

2014

Refining carbon flux paths using atomic trace data.

Jon Pey, Francisco J. Planes, John E. Beasley

Bioinform., 2014

Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks.

Jon Pey, Francisco J. Planes

Bioinform., 2014

2013

Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways.

Jon Pey, Kaspar Valgepea, Angel Rubio, John E. Beasley, Francisco J. Planes

BMC Syst. Biol., 2013

A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype.

Jon Pey, Luis Tobalina, Joaquín Prada J. de Cisneros, Francisco J. Planes

BMC Syst. Biol., 2013

Selection of human tissue-specific elementary flux modes using gene expression data.

Alberto Rezola, Jon Pey, Luis F. de Figueiredo, Adam Podhorski, Stefan Schuster, Angel Rubio, Francisco J. Planes

Bioinform., 2013

Joint analysis of miRNA and mRNA expression data.

Ander Muniategui, Jon Pey, Francisco J. Planes, Angel Rubio

Briefings Bioinform., 2013

2011

Do elementary flux modes combine linearly at the "atomic" level? Integrating tracer-based metabolomics data and elementary flux modes.

Jon Pey, Constantinos Theodoropoulos, Alberto Rezola, Angel Rubio, Marta Cascante, Francisco J. Planes

Biosyst., 2011

Exploring metabolic pathways in genome-scale networks via generating flux modes.

Alberto Rezola, Luis F. de Figueiredo, Matthias Brock, Jon Pey, Adam Podhorski, Christoph Wittmann, Stefan Schuster, Alexander Bockmayr, Francisco J. Planes

Bioinform., 2011