Jonathan D. Jou
Orcid: 0000-0001-7172-9032Affiliations:
- Duke University, Durham, NC, USA
According to our database1,
Jonathan D. Jou
authored at least 10 papers
between 2016 and 2020.
Collaborative distances:
Collaborative distances:
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Bibliography
2020
Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD: KRas protein-protein interface.
PLoS Comput. Biol., 2020
Minimization-Aware Recursive K*: A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape.
J. Comput. Biol., 2020
2019
Minimization-Aware Recursive K^* K ∗ ( MARK^* MARK ∗ ): A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape.
Proceedings of the Research in Computational Molecular Biology, 2019
2018
Novel Computational Protein Design Algorithms with Sparse Residue Interaction Graphs, Ensembles, and Mathematical Guarantees, and their Application to Antibody Design.
PhD thesis, 2018
J. Comput. Chem., 2018
<i>BBK* (Branch and Bound Over K*): </i> A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces.
J. Comput. Biol., 2018
2017
A critical analysis of computational protein design with sparse residue interaction graphs.
PLoS Comput. Biol., 2017
LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency.
J. Comput. Biol., 2017
BBK<sup>*</sup> (Branch and Bound over K<sup>*</sup>): A Provable and Efficient Ensemble-Based Algorithm to Optimize Stability and Binding Affinity over Large Sequence Spaces.
Proceedings of the Research in Computational Molecular Biology, 2017
2016
BWM*: A Novel, Provable, Ensemble-based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design.
J. Comput. Biol., 2016