Karissa Y. Sanbonmatsu

According to our database, Karissa Y. Sanbonmatsu authored at least 9 papers between 2010 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

From 2D to 4D: a containerized workflow and browser to explore dynamic chromatin architecture.

David H. Rogers, Cullen Roth, Cameron Tauxe, Jeannie T. Lee, Christina R. Steadman, Karissa Y. Sanbonmatsu, Anna Lappala, Shawn R. Starkenburg

BMC Bioinform., December, 2026

2023

Improved quality metrics for association and reproducibility in chromatin accessibility data using mutual information.

Cullen Roth, Vrinda Venu, Vanessa Job, Nicholas Lubbers, Karissa Y. Sanbonmatsu, Christina R. Steadman, Shawn R. Starkenburg

BMC Bioinform., December, 2023

2020

Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein.

Dylan Girodat, Avik K. Pati, Daniel S. Terry, Scott C. Blanchard, Karissa Y. Sanbonmatsu

PLoS Comput. Biol., November, 2020

Practical Considerations for Atomistic Structure Modeling with Cryo-EM Maps.

Doo Nam Kim, Dominik Gront, Karissa Y. Sanbonmatsu

J. Chem. Inf. Model., 2020

2019

Scaling molecular dynamics beyond 100, 000 processor cores for large-scale biophysical simulations.

Jaewoon Jung, Wataru Nishima, Marcus Daniels, Gavin Bascom, Chigusa Kobayashi, Adetokunbo Adedoyin, Michael E. Wall, Anna Lappala, Dominic Phillips, William Fischer, Chang-Shung Tung, Tamar Schlick, Yuji Sugita, Karissa Y. Sanbonmatsu

J. Comput. Chem., 2019

2017

A magnesium-induced triplex pre-organizes the SAM-II riboswitch.

Susmita Roy, Heiko Lammert, Ryan L. Hayes, Bin Chen, Regan LeBlanc, T. Kwaku Dayie, José N. Onuchic, Karissa Y. Sanbonmatsu

PLoS Comput. Biol., 2017

2013

Connecting the Kinetics and Energy Landscape of tRNA Translocation on the Ribosome.

Paul C. Whitford, Scott C. Blanchard, Jamie H. D. Cate, Karissa Y. Sanbonmatsu

PLoS Comput. Biol., 2013

2010

SMOG@ctbp: simplified deployment of structure-based models in GROMACS.

Jeffrey K. Noel, Paul C. Whitford, Karissa Y. Sanbonmatsu, José N. Onuchic

Nucleic Acids Res., 2010

Supercomputing in biology: towards understanding living systems in atomic detail.

Karissa Y. Sanbonmatsu

Proceedings of the 18th ACM SIGSOFT International Symposium on Foundations of Software Engineering, 2010