Kary A. C. S. Ocaña

According to our database, Kary A. C. S. Ocaña authored at least 56 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

An Exploratory Study of Deep Learning for Predicting Computational Tasks Behavior in HPC Systems.

Alexandre H. L. Porto, Micaella Coelho, Kary A. C. S. Ocaña, Carla Osthoff, Francieli Boito, Douglas de O. Cardoso

Proceedings of the International Symposium on Computer Architecture and High Performance Computing Workshops , 2023

2022

Parallel Performance and I/O Profiling of HPC RNA-Seq Applications.

Lucas Cruz, Micaella Coelho, Marcelo Galheigo, André Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff, Kary A. C. S. Ocaña

Computación y Sistemas, 2022

ParslRNA-Seq: An Efficient and Scalable RNAseq Analysis Workflow for Studies of Differentiated Gene Expression.

Kary A. C. S. Ocaña, Lucas Cruz, Micaella Coelho, Rafael Terra, Marcelo Galheigo, Andre Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff

Proceedings of the High Performance Computing - 9th Latin American Conference, 2022

2020

BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network.

Kary A. C. S. Ocaña, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Fábio Porto, Antônio Tadeu A. Gomes, Daniel de Oliveira, Ana Tereza Ribeiro de Vasconcelos

Future Gener. Comput. Syst., 2020

Capturing and Analyzing Provenance from Spark-based Scientific Workflows with SAMbA-RaP.

Thaylon Guedes, Lucas Bertelli Martins, Maria Luiza Furtuozo Falci, Vítor Silva, Kary A. C. S. Ocaña, Marta Mattoso, Marcos V. N. Bedo, Daniel de Oliveira

Future Gener. Comput. Syst., 2020

Provenance-based fault tolerance technique recommendation for cloud-based scientific workflows: a practical approach.

Thaylon Guedes, Leonardo Araújo de Jesus, Kary A. C. S. Ocaña, Lúcia M. A. Drummond, Daniel de Oliveira

Clust. Comput., 2020

Xi-DL: um Sistema de Gerência de Data Lake para Monitoramento de Dados da Saúde.

Lucas Tito, Cristina Motinha, Filipe Santiago, Kary A. C. S. Ocaña, Marcos V. N. Bedo, Daniel de Oliveira

Proceedings of the 35th Brazilian Symposium on Databases, 2020

2019

A provenance-based heuristic for preserving results confidentiality in cloud-based scientific workflows.

Marcos A. Guerine, Murilo B. Stockinger, Isabel Rosseti, Luidi Gelabert Simonetti, Kary A. C. S. Ocaña, Alexandre Plastino, Daniel de Oliveira

Future Gener. Comput. Syst., 2019

Análise Integrada de Grafos de Proveniência Heterogêneos por meio de uma Abordagem PolyStore.

Yan Mendes, Victor Ströele, Daniel de Oliveira, Kary A. C. S. Ocaña

Proceedings of the 34th Brazilian Symposium on Databases, 2019

Um Estudo Comparativo de Mecanismos de Privacidade Diferencial sobre um Dataset de Ocorrências do ZIKV no Brasil.

Daniel de Oliveira, Eduardo Rodrigues Duarte Neto, Serafim Costa, Paulo Roberto Pessoa Amora, Asley Caldas, Marco Horta, Ana Maria de Fillippis, Kary A. C. S. Ocaña, Vânia Maria P. Vidal, Javam C. Machado

Proceedings of the 34th Brazilian Symposium on Databases, 2019

ArrOW: Experiencing a Parallel Cloud-Based De Novo Assembler Workflow.

Kary A. C. S. Ocaña, Thaylon Guedes, Daniel de Oliveira

Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2019

Towards a Science Gateway for Bioinformatics: Experiences in the Brazilian System of High Performance Computing.

Kary Ann del Carmen Ocaña Gautherot, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Antônio Tadeu A. Gomes, Daniel de Oliveira, Fábio Porto, Ana Tereza Ribeiro de Vasconcelos

Proceedings of the 19th IEEE/ACM International Symposium on Cluster, 2019

Performance Evaluation of Parallel Inference of Large Phylogenetic Trees in Santos Dumont Supercomputer: A Practical Approach.

Kary A. C. S. Ocaña, Carla Osthoff, Micaella Coelho, Marcelo Galheigo, Isabela Canuto, Douglas E. M. de Oliveira, Daniel de Oliveira

Proceedings of the High Performance Computing - 6th Latin American Conference, 2019

2018

BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments.

Maria Luiza Mondelli, Thiago Magalhães, Guilherme Loss, Michael Wilde, Ian T. Foster, Marta Mattoso, Daniel S. Katz, Helio J. C. Barbosa, Ana Tereza Ribeiro de Vasconcelos, Kary A. C. S. Ocaña, Luiz M. R. Gadelha Jr.

CoRR, 2018

Scientific Data Analysis Using Data-Intensive Scalable Computing: The SciDISC Project.

Patrick Valduriez, Marta Mattoso, Reza Akbarinia, Heraldo Borges, José J. Camata, Alvaro L. G. A. Coutinho, Daniel Gaspar, Noel Moreno Lemus, Ji Liu, Hermano Lustosa, Florent Masseglia, Fabrício Nogueira da Silva, Vítor Silva, Renan Souza, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Daniel de Oliveira, Esther Pacitti, Fábio Porto, Dennis E. Shasha

Proceedings of the Latin America Data Science Workshop co-located with 44th International Conference on Very Large Data Bases (VLDB 2018), 2018

2017

Mirror Mirror on the Wall, How Do I Dimension My Cloud After All?

Rafaelli de C. Coutinho, Yuri Frota, Kary A. C. S. Ocaña, Daniel de Oliveira, Lúcia M. A. Drummond

Proceedings of the Cloud Computing - Principles, Systems and Applications, Second Edition, 2017

Managing Provenance of Implicit Data Flows in Scientific Experiments.

Vitor C. Neves, Daniel de Oliveira, Kary A. C. S. Ocaña, Vanessa Braganholo, Leonardo Murta

ACM Trans. Internet Techn., 2017

Querying Provenance along with External Domain Data Using Prolog.

Wellington Moreira de Oliveira, Kary A. C. S. Ocaña, Daniel de Oliveira, Vanessa Braganholo

J. Inf. Data Manag., 2017

Deriving scientific workflows from algebraic experiment lines: A practical approach.

Anderson Marinho, Daniel de Oliveira, Eduardo S. Ogasawara, Vítor Silva, Kary A. C. S. Ocaña, Leonardo Murta, Vanessa Braganholo, Marta Mattoso

Future Gener. Comput. Syst., 2017

Towards preserving results confidentiality in cloud-based scientific workflows.

Isabel Rosseti, Kary A. C. S. Ocaña, Daniel de Oliveira

Proceedings of the 12th Workshop on Workflows in Support of Large-Scale Science, 2017

SciAgile: Aplicação de Metodologias Ágeis em Experimentos Científicos Baseados em Simulação.

Augusto Romeiro, Kary A. C. S. Ocaña, Marcos Kalinowski, Daniel de Oliveira

Proceedings of the XX Iberoamerican Conference on Software Engineering, 2017

2016

A Dynamic Cloud Dimensioning Approach for Parallel Scientific Workflows: a Case Study in the Comparative Genomics Domain.

Rafaelli de C. Coutinho, Yuri Frota, Kary A. C. S. Ocaña, Daniel de Oliveira, Lúcia M. A. Drummond

J. Grid Comput., 2016

Um Sistema de Informação para Gerência de Projetos Científicos baseados em Simulações Computacionais [An IS for Managing Scientific Projects].

Leonardo S. Ramos, Kary A. C. S. Ocaña, Daniel Oliveira

Proceedings of the XII Brazilian Symposium on Information Systems on Brazilian Symposium on Information Systems: Information Systems in the Cloud Computing Era, 2016

Gerência de Incerteza em Bancos de Dados de Proveniência de Workflows de Bioinformática.

Gustavo Tallarida, Kary A. C. S. Ocaña, Aline Paes, Vanessa Braganholo, Daniel de Oliveira

Proceedings of the 31º Simpósio Brasileiro de Banco de Dados, 2016

Analyzing Provenance Across Heterogeneous Provenance Graphs.

Wellington Moreira de Oliveira, Paolo Missier, Kary A. C. S. Ocaña, Daniel de Oliveira, Vanessa Braganholo

Proceedings of the Provenance and Annotation of Data and Processes, 2016

2015

Dynamic steering of HPC scientific workflows: A survey.

Marta Mattoso, Jonas Dias, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Flavio Costa, Felipe Horta, Vítor Silva, Daniel de Oliveira

Future Gener. Comput. Syst., 2015

Uma Abordagem para Publicação de Dados de Proveniência de Workflows Científicos na Web Semântica.

Rachel Castro, Renan Souza, Vítor Silva, Kary A. C. S. Ocaña, Daniel de Oliveira, Marta Mattoso

Proceedings of the XXX Simpósio Brasileiro de Banco de Dados, 2015

Data Analytics in Bioinformatics: Data Science in Practice for Genomics Analysis Workflows.

Kary A. C. S. Ocaña, Vítor Silva, Daniel de Oliveira, Marta Mattoso

Proceedings of the 11th IEEE International Conference on e-Science, 2015

2014

Captura e Consulta a Dados de Proveniência Retrospectiva Implícita Intra-Atividade.

Wellington Moreira de Oliveira, Vitor C. Neves, Kary A. C. S. Ocaña, Leonardo Murta, Daniel de Oliveira, Vanessa Braganholo

Proceedings of the XXIX Simpósio Brasileiro de Banco de Dados, 2014

Debugging Scientific Workflows with Provenance: Achievements and Lessons Learned.

Daniel de Oliveira, Flavio Costa, Vítor Silva, Kary A. C. S. Ocaña, Marta Mattoso

Proceedings of the XXIX Simpósio Brasileiro de Banco de Dados, 2014

Exploring Large Scale Receptor-Ligand Pairs in Molecular Docking Workflows in HPC Clouds.

Kary A. C. S. Ocaña, Silvia Benza, Daniel de Oliveira, Jonas Dias, Marta Mattoso

Proceedings of the 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, 2014

Towards Supporting Provenance Gathering and Querying in Different Database Approaches.

Flavio Costa, Vítor Silva, Daniel de Oliveira, Kary A. C. S. Ocaña, Marta Mattoso

Proceedings of the Provenance and Annotation of Data and Processes, 2014

Exploiting the Parallel Execution of Homology Workflow Alternatives in HPC Compute Clouds.

Kary A. C. S. Ocaña, Daniel de Oliveira, Vítor Silva, Silvia Benza, Marta Mattoso

Proceedings of the Service-Oriented Computing - ICSOC 2014 Workshops, 2014

Evaluating Grasp-based cloud dimensioning for comparative genomics: A practical approach.

Rafaelli de C. Coutinho, Lúcia M. A. Drummond, Yuri Frota, Daniel de Oliveira, Kary A. C. S. Ocaña

Proceedings of the 2014 IEEE International Conference on Cluster Computing, 2014

2013

Performance Analysis of Data Filtering in Scientific Workflows.

João Carlos de A. R. Gonçalves, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso

J. Inf. Data Manag., 2013

Performance evaluation of parallel strategies in public clouds: A study with phylogenomic workflows.

Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, João Carlos de A. R. Gonçalves, Fernanda Araújo Baião, Marta Mattoso

Future Gener. Comput. Syst., 2013

Designing a parallel cloud based comparative genomics workflow to improve phylogenetic analyses.

Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso

Future Gener. Comput. Syst., 2013

Runtime Dynamic Structural Changes of Scientific Workflows in Clouds.

Igor Dos Santos, Jonas Dias, Daniel de Oliveira, Eduardo S. Ogasawara, Kary A. C. S. Ocaña, Marta Mattoso

Proceedings of the IEEE/ACM 6th International Conference on Utility and Cloud Computing, 2013

User-steering of HPC workflows: state-of-the-art and future directions.

Marta Mattoso, Kary A. C. S. Ocaña, Felipe Horta, Jonas Dias, Eduardo S. Ogasawara, Vítor Silva, Daniel de Oliveira, Flavio Costa, Igor Araújo

Proceedings of the 2nd ACM SIGMOD Workshop on Scalable Workflow Execution Engines and Technologies, 2013

SciLightning: A Cloud Provenance-Based Event Notification for Parallel Workflows.

Julliano Trindade Pintas, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Marta Mattoso

Proceedings of the Service-Oriented Computing - ICSOC 2013 Workshops, 2013

Dimensioning the virtual cluster for parallel scientific workflows in clouds.

Daniel de Oliveira, Vitor Viana, Eduardo S. Ogasawara, Kary A. C. S. Ocaña, Marta Mattoso

Proceedings of the ScienceCloud'13, 2013

Provenance traces from Chiron parallel workflow engine.

Felipe Horta, Vítor Silva, Flavio Costa, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso

Proceedings of the Joint 2013 EDBT/ICDT Conferences, 2013

Capturing and querying workflow runtime provenance with PROV: a practical approach.

Flavio Costa, Vítor Silva, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso

Proceedings of the Joint 2013 EDBT/ICDT Conferences, 2013

2012

A Provenance-based Adaptive Scheduling Heuristic for Parallel Scientific Workflows in Clouds.

Daniel de Oliveira, Kary A. C. S. Ocaña, Fernanda Araújo Baião, Marta Mattoso

J. Grid Comput., 2012

An adaptive parallel execution strategy for cloud-based scientific workflows.

Daniel de Oliveira, Eduardo S. Ogasawara, Kary A. C. S. Ocaña, Fernanda Araújo Baião, Marta Mattoso

Concurr. Comput. Pract. Exp., 2012

Exploring Molecular Evolution Reconstruction Using a Parallel Cloud Based Scientific Workflow.

Kary A. C. S. Ocaña, Daniel de Oliveira, Felipe Horta, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso

Proceedings of the Advances in Bioinformatics and Computational Biology, 2012

Abstract: Using Provenance to Visualize Data from Large-Scale Experiments.

Felipe Horta, Jonas Dias, Kary A. C. S. Ocaña, Daniel de Oliveira, Eduardo S. Ogasawara, Marta Mattoso

Proceedings of the 2012 SC Companion: High Performance Computing, 2012

Handling Failures in Parallel Scientific Workflows Using Clouds.

Flavio Costa, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso

Proceedings of the 2012 SC Companion: High Performance Computing, 2012

Using Provenance Analyzers to Improve the Performance of Scientific Workflows in Cloud Environments.

João Carlos de A. R. Gonçalves, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso

Proceedings of the XXVII Simpósio Brasileiro de Banco de Dados, 2012

Using Domain-Specific Data to Enhance Scientific Workflow Steering Queries.

João Carlos de A. R. Gonçalves, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Marta Mattoso

Proceedings of the Provenance and Annotation of Data and Processes, 2012

Enabling Re-executions of Parallel Scientific Workflows Using Runtime Provenance Data.

Flavio Costa, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Marta Mattoso

Proceedings of the Provenance and Annotation of Data and Processes, 2012

Discovering drug targets for neglected diseases using a pharmacophylogenomic cloud workflow.

Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso

Proceedings of the 8th IEEE International Conference on E-Science, 2012

2011

SciPhy: A Cloud-Based Workflow for Phylogenetic Analysis of Drug Targets in Protozoan Genomes.

Kary A. C. S. Ocaña, Daniel de Oliveira, Eduardo S. Ogasawara, Alberto M. R. Dávila, Alexandre A. B. Lima, Marta Mattoso

Proceedings of the Advances in Bioinformatics and Computational Biology, 2011

Optimizing Phylogenetic Analysis Using SciHmm Cloud-based Scientific Workflow.

Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso

Proceedings of the IEEE 7th International Conference on E-Science, 2011

A Performance Evaluation of X-Ray Crystallography Scientific Workflow Using SciCumulus.

Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Fernanda Araújo Baião, Marta Mattoso

Proceedings of the IEEE International Conference on Cloud Computing, 2011

2008

ProtozoaDB: dynamic visualization and exploration of protozoan genomes.

Alberto M. R. Dávila, Pablo N. Mendes, Glauber Wagner, Diogo A. Tschoeke, Rafael R. C. Cuadrat, Felipe Liberman, Luciana Matos, Thiago S. Satake, Kary A. C. S. Ocaña, Omar Triana, Sérgio Manuel Serra da Cruz, Henrique C. L. Jucá, Juliano C. Cury, Fabrício Nogueira da Silva, Guilherme A. Geronimo, Margarita Ruiz, Eduardo Ruback, Floriano P. Silva Jr., Christian M. Probst, Edmundo C. Grisard, Marco A. Krieger, Samuel Goldenberg, Maria Cláudia Reis Cavalcanti, Milton O. Moraes, Maria Luiza Machado Campos, Marta Mattoso

Nucleic Acids Res., 2008