Kristen M. Naegle

According to our database, Kristen M. Naegle authored at least 8 papers between 2011 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

Ten simple rules for effectively assessing lab environments.

Kristen M. Naegle, Jeffrey J. Saucerman, Julie Leonard-Duke, Michael Rariden, Yonathan Tamrat Aberra

PLoS Comput. Biol., 2025

2021

KinPred: A unified and sustainable approach for harnessing proteome-level human kinase-substrate predictions.

Bingjie Xue, Benjamin Jordan, Saqib Rizvi, Kristen M. Naegle

PLoS Comput. Biol., 2021

Ten simple rules for effective presentation slides.

Kristen M. Naegle

PLoS Comput. Biol., 2021

2020

ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis.

Arshag D. Mooradian, Sjoerd van der Post, Kristen M. Naegle, Jason M. Held

PLoS Comput. Biol., 2020

2018

OpenEnsembles: A Python Resource for Ensemble Clustering.

Tom Ronan, Shawn Anastasio, Zhijie Qi, Pedro Henrique S. Vieira Tavares, Roman Sloutsky, Kristen M. Naegle

J. Mach. Learn. Res., 2018

2015

ProteomeScout: a repository and analysis resource for post-translational modifications and proteins.

Matthew K. Matlock, Alex S. Holehouse, Kristen M. Naegle

Nucleic Acids Res., 2015

2013

Accounting for noise when clustering biological data.

Roman Sloutsky, Nicolas Jimenez, S. Joshua Swamidass, Kristen M. Naegle

Briefings Bioinform., 2013

2011

MCAM: Multiple Clustering Analysis Methodology for Deriving Hypotheses and Insights from High-Throughput Proteomic Datasets.

Kristen M. Naegle, Roy E. Welsch, Michael B. Yaffe, Forest M. White, Douglas A. Lauffenburger

PLoS Comput. Biol., 2011