Lu Zhang

According to our database, Lu Zhang authored at least 25 papers between 2013 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Enhanced Disease Susceptible Variant Identification via Short Identity by Descent Segments.

Chonghao Wang, Werner Pieter Veldsman, Yufen Huang, Xiaodong Fang, Lu Zhang

IEEE Trans. Comput. Biol. Bioinform., 2026

stDyer-image improves clustering analysis of spatially resolved transcriptomics and proteomics with morphological images.

Ke Xu, Xin Maizie Zhou, Lu Zhang

Bioinform., 2026

2025

stDyer-image improves clustering analysis of spatially resolved transcriptomics and proteomics with morphological images.

Ke Xu, Xin Maizie Zhou, Lu Zhang

Dataset, April, 2025

DBNX: A Machine Learning Method for Ensembling Polygenic Risk Scores and Non-Genetic Factors.

Xiangzhe Yuan, Chonghao Wang, Shuqin Zhu, Lu Zhang

IEEE Trans. Comput. Biol. Bioinform., 2025

Language models for data extraction and risk of bias assessment in complementary medicine.

Honghao Lai, Jiayi Liu, Chunyang Bai, Hui Liu, Bei Pan, Xufei Luo, Liangying Hou, Weilong Zhao, Danni Xia, Jinhui Tian, Yaolong Chen, Lu Zhang, Janne Estill, Jie Liu, Xing Liao, Nannan Shi, Xin Sun, Hongcai Shang, Zhaoxiang Bian, Kehu Yang, Luqi Huang, Long Ge, Haodong Li, Ye Wang, Huayu Zhang, Di Zhu, Dongrui Peng, Fan Wang, Yueyan Li, Shilin Tang, Hanxiang Liu, Zeming Li, Zhenhua Yang, Xuan Yu, Yishan Qin

npj Digit. Medicine, 2025

RAPID: Reliable and efficient Automatic generation of submission rePortIng checklists with large language moDels.

Zeming Li, Xufei Luo, Zhenhua Yang, Huayu Zhang, Bingyi Wang, Long Ge, Zhaoxiang Bian, James Zou, Yaolong Chen, Lu Zhang, Ye Wang, Haodong Li, Di Zhu, Yuanyuan Yao, Dongrui Peng, Honghao Lai, Jie Zhang, Fan Wang, Minjie Duan, Yueyan Li, Shilin Tang

J. Am. Medical Informatics Assoc., 2025

TRAFICA: an open chromatin language model to improve transcription factor binding affinity prediction.

Yu Xu, Chonghao Wang, Ke Xu, Yi Ding, Aiping Lyu, Lu Zhang

Bioinform., 2025

Mitigation of multi-scale biases in cell-type deconvolution for spatially resolved transcriptomics using HarmoDecon.

Zirui Wang, Ke Xu, Yang Liu, Yu Xu, Lu Zhang

Bioinform., 2025

A multimodal framework for early detection and classification of social isolation and loneliness among Chinese older adults.

Hao Song, Jueni Lyu, Lu Zhang, Christy M. K. Cheung

Briefings Bioinform., 2025

IDCLP: A Deep Learning Framework for Predicting Chemical-Induced Gene Expression Profiles Through Multisource Data Integration.

Guo Mao, Hiu Fung Yip, Lu Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

2024

A multi-modal deep language model for contaminant removal from metagenome-assembled genomes.

Bohao Zou, Jingjing Wang, Yi Ding, Zhenmiao Zhang, Yufen Huang, Xiaodong Fang, Ka Chun Cheung, Simon See, Lu Zhang

Nat. Mac. Intell., 2024

Integrated analysis of gut microbiome compositional and genomic alterations reveals strain diversity and actionable biomarkers across multiple colorectal cancer cohorts.

Chao Yang, Jingjing Wang, Lu Zhang

Proceedings of the 15th ACM International Conference on Bioinformatics, 2024

Med-PRSIMD: Enhanced Complex Disease Risk Prediction through Integrative Analysis of Multi-Type Data and Medical History Records.

Zeming Li, Yu Xu, Debajyoti Chowdhury, Hip Fung Yip, Chonghao Wang, Lu Zhang

Proceedings of the 15th ACM International Conference on Bioinformatics, 2024

2023

Benchmarking multi-platform sequencing technologies for human genome assembly.

Jingjing Wang, Werner Pieter Veldsman, Xiaodong Fang, Yufen Huang, Xuefeng Xie, Aiping Lyu, Lu Zhang

Briefings Bioinform., September, 2023

Accurate and interpretable gene expression imputation on scRNA-seq data using IGSimpute.

Ke Xu, Chinwang Cheong, Werner Pieter Veldsman, Aiping Lyu, William K. Cheung, Lu Zhang

Briefings Bioinform., May, 2023

Benchmarking genome assembly methods on metagenomic sequencing data.

Zhenmiao Zhang, Chao Yang, Werner Pieter Veldsman, Xiaodong Fang, Lu Zhang

Briefings Bioinform., March, 2023

A comprehensive investigation of statistical and machine learning approaches for predicting complex human diseases on genomic variants.

Chonghao Wang, Jing Zhang, Werner Pieter Veldsman, Xin Zhou, Lu Zhang

Briefings Bioinform., January, 2023

2022

dynDeepDRIM: a dynamic deep learning model to infer direct regulatory interactions using time-course single-cell gene expression data.

Yu Xu, Jiaxing Chen, Aiping Lyu, William K. Cheung, Lu Zhang

Briefings Bioinform., November, 2022

A machine learning model for disease risk prediction by integrating genetic and non-genetic factors.

Yu Xu, Chonghao Wang, Zeming Li, Yunpeng Cai, Ouzhou Young, Aiping Lyu, Lu Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs.

Zhenmiao Zhang, Lu Zhang

BMC Bioinform., 2021

DeepDRIM: a deep neural network to reconstruct cell-type-specific gene regulatory network using single-cell RNA-seq data.

Jiaxing Chen, Chinwang Cheong, Liang Lan, Xin Zhou, Jiming Liu, Aiping Lyu, William K. Cheung, Lu Zhang

Briefings Bioinform., 2021

An ensemble deep learning framework to refine large deletions in linked-reads.

Yunfei Hu, V. Mangal Sanidhya, Lu Zhang, Zhou Xin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2016

More accurate models for detecting gene-gene interactions from public expression compendia.

Lu Zhang, Jiaxing Chen, Shuai Cheng Li

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

Reconstructing directed gene regulatory network by only gene expression data.

Lu Zhang, Yen Kaow Ng, Shuaicheng Li

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2013

PriVar: a toolkit for prioritizing SNVs and indels from next-generation sequencing data.

Lu Zhang, Jing Zhang, Jing Yang, Dingge Ying, Yu-Lung Lau, Wanling Yang

Bioinform., 2013