Mateo Gray

According to our database, Mateo Gray authored at least 6 papers between 2022 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Spark.

Mateo Gray, Sebastian Will, Hosna Jabbari

Dataset, August, 2025

CParty: hierarchically constrained partition function of RNA pseudoknots.

Mateo Gray, Luke Trinity, Ulrike Stege, Yann Ponty, Sebastian Will, Hosna Jabbari

Bioinform., 2025

Spark: Sparsified Hierarchical Energy Minimization of RNA Pseudoknots.

Mateo Gray, Sebastian Will, Hosna Jabbari

Proceedings of the 25th International Conference on Algorithms for Bioinformatics, 2025

2024

SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration.

Mateo Gray, Sebastian Will, Hosna Jabbari

Algorithms Mol. Biol., December, 2024

2023

SparseRNAFolD: Sparse RNA Pseudoknot-Free Folding Including Dangles.

Mateo Gray, Sebastian Will, Hosna Jabbari

Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

2022

KnotAli: informed energy minimization through the use of evolutionary information.

Mateo Gray, Sean Chester, Hosna Jabbari

BMC Bioinform., 2022