Matthew E. Ritchie

According to our database, Matthew E. Ritchie authored at least 21 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Flexiplex: a versatile demultiplexer and search tool for omics data.

Oliver Cheng, Min Hao Ling, Changqing Wang, Shuyi Wu, Matthew E. Ritchie, Jonathan Göke, Noorul Amin, Nadia M. Davidson

Bioinform., March, 2024

2021

NanoMethViz: An R/Bioconductor package for visualizing long-read methylation data.

Shian Su, Quentin Gouil, Marnie E. Blewitt, Dianne Cook, Peter F. Hickey, Matthew E. Ritchie

PLoS Comput. Biol., 2021

2020

CellBench: R/Bioconductor software for comparing single-cell RNA-seq analysis methods.

Shian Su, Luyi Tian, Xueyi Dong, Peter F. Hickey, Saskia Freytag, Matthew E. Ritchie

Bioinform., 2020

2019

BiocPkgTools: Toolkit for mining the<i> Bioconductor</i> package ecosystem.

Shian Su, Vincent J. Carey, Lori A. Shepherd, Matthew E. Ritchie, Martin T. Morgan, Sean Davis

F1000Research, 2019

2018

scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data.

Luyi Tian, Shian Su, Xueyi Dong, Daniela Amann-Zalcenstein, Christine Biben, Azadeh Seidi, Douglas J. Hilton, Shalin H. Naik, Matthew E. Ritchie

PLoS Comput. Biol., 2018

2017

Glimma: interactive graphics for gene expression analysis.

Shian Su, Charity W. Law, Casey Ah-Cann, Marie-Liesse Asselin-Labat, Marnie E. Blewitt, Matthew E. Ritchie

Bioinform., 2017

Combining multiple tools outperforms individual methods in gene set enrichment analyses.

Monther Alhamdoosh, Milica Ng, Nicholas J. Wilson, Julie M. Sheridan, Huy Huynh, Michael J. Wilson, Matthew E. Ritchie

Bioinform., 2017

2014

KRLMM: an adaptive genotype calling method for common and low frequency variants.

Ruijie Liu, Zhiyin Dai, Meredith Yeager, Rafael A. Irizarry, Matthew E. Ritchie

BMC Bioinform., 2014

2013

<i>illuminaio</i>: An open source IDAT parsing tool for Illumina microarrays.

Mike L. Smith, Keith A. Baggerly, Henrik Bengtsson, Matthew E. Ritchie, Kasper D. Hansen

F1000Research, 2013

2012

Allele-specific expression analysis methods for high-density SNP microarray data.

Ruijie Liu, Ana-Teresa Maia, Roslin Russell, Carlos Caldas, Bruce A. Ponder, Matthew E. Ritchie

Bioinform., 2012

2011

BeadArray Expression Analysis Using Bioconductor.

Matthew E. Ritchie, Mark J. Dunning, Mike L. Smith, Wei Shi, Andy G. Lynch

PLoS Comput. Biol., 2011

Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips.

Matthew E. Ritchie, Ruijie Liu, Benilton S. Carvalho, Rafael A. Irizarry

BMC Bioinform., 2011

2010

Data analysis issues for allele-specific expression using Illumina's GoldenGate assay.

Matthew E. Ritchie, Matthew S. Forrest, Antigone S. Dimas, Caroline Daelemans, Emmanouil T. Dermitzakis, Panagiotis Deloukas, Simon Tavaré

BMC Bioinform., 2010

2009

Illumina WG-6 BeadChip strips should be normalized separately.

Wei Shi, Ashish Banerjee, Matthew E. Ritchie, Steve Gerondakis, Gordon K. Smyth

BMC Bioinform., 2009

Swift: primary data analysis for the Illumina Solexa sequencing platform.

Nava Whiteford, Tom Skelly, Christina Curtis, Matthew E. Ritchie, Andrea Löhr, Alexander Wait Zaranek, Irina I. Abnizova, Clive Brown

Bioinform., 2009

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.

Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry

Bioinform., 2009

2008

Statistical issues in the analysis of Illumina data.

Mark J. Dunning, Nuno L. Barbosa-Morais, Andy G. Lynch, Simon Tavaré, Matthew E. Ritchie

BMC Bioinform., 2008

BASH: a tool for managing BeadArray spatial artefacts.

Jonathan M. Cairns, Mark J. Dunning, Matthew E. Ritchie, Roslin Russell, Andy G. Lynch

Bioinform., 2008

2007

A comparison of background correction methods for two-colour microarrays.

Matthew E. Ritchie, Jeremy David Silver, Alicia Oshlack, Melissa Holmes, Dileepa S. Diyagama, Andrew J. Holloway, Gordon K. Smyth

Bioinform., 2007

beadarray: R classes and methods for Illumina bead-based data.

Mark J. Dunning, Mike L. Smith, Matthew E. Ritchie, Simon Tavaré

Bioinform., 2007

2006

Empirical array quality weights in the analysis of microarray data.

Matthew E. Ritchie, Dileepa S. Diyagama, Jody Neilson, Ryan van Laar, Alexander Dobrovic, Andrew J. Holloway, Gordon K. Smyth

BMC Bioinform., 2006