Gordon K. Smyth

According to our database, Gordon K. Smyth authored at least 29 papers between 1991 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Neither random nor censored: estimating intensity-dependent probabilities for missing values in label-free proteomics.

Mengbo Li, Gordon K. Smyth

Bioinform., May, 2023

2017

Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR.

Yunshun Chen, Bhupinder Pal, Jane E. Visvader, Gordon K. Smyth

F1000Research, 2017

2016

statmod: Probability Calculations for the Inverse Gaussian Distribution.

Göknur Giner, Gordon K. Smyth

R J., 2016

From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline.

Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth

F1000Research, 2016

It's DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR.

Aaron T. L. Lun, Yunshun Chen, Gordon K. Smyth

Proceedings of the Statistical Genomics - Methods and Protocols, 2016

2015

diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data.

Aaron T. L. Lun, Gordon K. Smyth

BMC Bioinform., 2015

2014

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

Yang Liao, Gordon K. Smyth, Wei Shi

Bioinform., 2014

2013

Separate-channel analysis of two-channel microarrays: recovering inter-spot information.

Gordon K. Smyth, Naomi S. Altman

BMC Bioinform., 2013

2010

ROAST: rotation gene set tests for complex microarray experiments.

Di Wu, Elgene Lim, François Vaillant, Marie-Liesse Asselin-Labat, Jane E. Visvader, Gordon K. Smyth

Bioinform., 2010

<tt>edgeR</tt>: a Bioconductor package for differential expression analysis of digital gene expression data.

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth

Bioinform., 2010

2009

Illumina WG-6 BeadChip strips should be normalized separately.

Wei Shi, Ashish Banerjee, Matthew E. Ritchie, Steve Gerondakis, Gordon K. Smyth

BMC Bioinform., 2009

Testing significance relative to a fold-change threshold is a TREAT.

Davis J. McCarthy, Gordon K. Smyth

Bioinform., 2009

2008

Evaluation of Tweedie exponential dispersion model densities by Fourier inversion.

Peter K. Dunn, Gordon K. Smyth

Stat. Comput., 2008

2007

Moderated statistical tests for assessing differences in tag abundance.

Mark D. Robinson, Gordon K. Smyth

Bioinform., 2007

A comparison of background correction methods for two-colour microarrays.

Matthew E. Ritchie, Jeremy David Silver, Alicia Oshlack, Melissa Holmes, Dileepa S. Diyagama, Andrew J. Holloway, Gordon K. Smyth

Bioinform., 2007

Using DNA microarrays to study gene expression in closely related species.

Alicia Oshlack, Adrien E. Chabot, Gordon K. Smyth, Yoav Gilad

Bioinform., 2007

2006

Empirical array quality weights in the analysis of microarray data.

Matthew E. Ritchie, Dileepa S. Diyagama, Jody Neilson, Ryan van Laar, Alexander Dobrovic, Andrew J. Holloway, Gordon K. Smyth

BMC Bioinform., 2006

Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis.

Andrew J. Holloway, Alicia Oshlack, Dileepa S. Diyagama, David D. L. Bowtell, Gordon K. Smyth

BMC Bioinform., 2006

affylmGUI: a graphical user interface for linear modeling of single channel microarray data.

James M. Wettenhall, Ken M. Simpson, Keith Satterley, Gordon K. Smyth

Bioinform., 2006

2005

Series evaluation of Tweedie exponential dispersion model densities.

Peter K. Dunn, Gordon K. Smyth

Stat. Comput., 2005

Use of within-array replicate spots for assessing differential expression in microarray experiments.

Gordon K. Smyth, Joëlle Michaud, Hamish S. Scott

Bioinform., 2005

A systematic approach for comprehensive T-cell epitope discovery using peptide libraries.

Tim Beißbarth, Jason A. Tye-Din, Gordon K. Smyth, Terence P. Speed, Robert P. Anderson

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004

Semi-parametric extended Poisson process models for count data.

Heather M. Podlich, Malcolm J. Faddy, Gordon K. Smyth

Stat. Comput., 2004

limmaGUI: A graphical user interface for linear modeling of microarray data.

James M. Wettenhall, Gordon K. Smyth

Bioinform., 2004

2002

An Improved Saddlepoint Approximation Based on the Negative Binomial Distribution for the General Birth Process.

Gordon K. Smyth, Heather M. Podlich

Comput. Stat., 2002

2000

Employing Symmetry Constraints for Improved Frequency Estimation by Eigenanalysis Methods.

Gordon K. Smyth

Technometrics, 2000

1996

Partitioned algorithms for maximum likelihood and other non-linear estimation.

Gordon K. Smyth

Stat. Comput., 1996

1995

A Modified Prony Algorithm for Exponential Function Fitting.

Michael R. Osborne, Gordon K. Smyth

SIAM J. Sci. Comput., 1995

1991

A Modified Prony Algorithm for Fitting Functions Defined by Difference Equations.

Michael R. Osborne, Gordon K. Smyth

SIAM J. Sci. Comput., 1991