Mehdi D. Davari

According to our database, Mehdi D. Davari authored at least 9 papers between 2015 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2025

Semi-supervised prediction of protein fitness for data-driven protein engineering.

Alicia Olivares-Gil, José Antonio Barbero-Aparicio, Juan José Rodríguez, José-Francisco Díez-Pastor, César García-Osorio, Mehdi D. Davari

J. Cheminformatics, December, 2025

From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering.

Wen-ran Li, Xavier F. Cadet, David Medina-Ortiz, Mehdi D. Davari, Ramanathan Sowdhamini, Cedric Damour, Yu Li, Alain Miranville, Frédéric Cadet

CoRR, January, 2025

2024

FlavorMiner: a machine learning platform for extracting molecular flavor profiles from structural data.

Fabio Herrera-Rocha, Miguel Fernández-Niño, Jorge Duitama, Mónica P. Cala, María José Chica, Ludger A. Wessjohann, Mehdi D. Davari, Andrés Fernando González Barrios

J. Cheminformatics, December, 2024

Peptipedia v2.0: a peptide sequence database and user-friendly web platform. A major update.

Gabriel Cabas-Mora, Anamaria Sanchez-Daza, Nicole Soto-García, Valentina Garrido, Diego Álvarez-Saravia, Marcelo A. Navarrete, Lindybeth Sarmiento-Varón, Julieta Sepúlveda-Yañez, Mehdi D. Davari, Frédéric Cadet, Alvaro Olivera-Nappa, Roberto Uribe Paredes, David Medina-Ortiz

Database J. Biol. Databases Curation, January, 2024

Evolutionary Probability and Stacked Regressions Enable Data-Driven Protein Engineering with Minimized Experimental Effort.

Alexander-Maurice Illig, Niklas E. Siedhoff, Mehdi D. Davari, Ulrich Schwaneberg

J. Chem. Inf. Model., 2024

Peptide-based drug discovery through artificial intelligence: towards an autonomous design of therapeutic peptides.

Montserrat Goles, Anamaria Sanchez-Daza, Gabriel Cabas-Mora, Lindybeth Sarmiento-Varón, Julieta Sepúlveda-Yañez, Hoda Anvari-Kazemabad, Mehdi D. Davari, Roberto Uribe Paredes, Alvaro Olivera-Nappa, Marcelo A. Navarrete, David Medina-Ortiz

Briefings Bioinform., 2024

2021

PyPEF - An Integrated Framework for Data-Driven Protein Engineering.

Niklas E. Siedhoff, Alexander-Maurice Illig, Ulrich Schwaneberg, Mehdi D. Davari

J. Chem. Inf. Model., 2021

2016

What's My Substrate? Computational Function Assignment of <i>Candida parapsilosis</i> ADH5 by Genome Database Search, Virtual Screening, and QM/MM Calculations.

Gaurao V. Dhoke, Yunus Ensari, Mehdi D. Davari, Anna Joëlle Ruff, Ulrich Schwaneberg, Marco Bocola

J. Chem. Inf. Model., 2016

2015

Activity prediction of substrates in NADH-dependent carbonyl reductase by docking requires catalytic constraints and charge parameterization of catalytic zinc environment.

Gaurao V. Dhoke, Christoph Loderer, Mehdi D. Davari, Marion Ansorge-Schumacher, Ulrich Schwaneberg, Marco Bocola

J. Comput. Aided Mol. Des., 2015