Ramanathan Sowdhamini
Orcid: 0000-0002-6642-2367
According to our database1,
Ramanathan Sowdhamini
authored at least 52 papers
between 2002 and 2022.
Collaborative distances:
Collaborative distances:
Timeline
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Bibliography
2022
DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins.
Database J. Biol. Databases Curation, 2022
PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe.
Database J. Biol. Databases Curation, 2022
2019
GenDiS database update with improved approach and features to recognize homologous sequences of protein domain superfamilies.
Database J. Biol. Databases Curation, 2019
PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe.
Database J. Biol. Databases Curation, 2019
2016
PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features.
Nucleic Acids Res., 2016
RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information.
BMC Bioinform., 2016
Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space.
Bioinform., 2016
Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.
Briefings Bioinform., 2016
2015
NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection.
Nucleic Acids Res., 2015
BMC Bioinform., 2015
SInCRe - structural interactome computational resource for <i>Mycobacterium tuberculosis</i>.
Database J. Biol. Databases Curation, 2015
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
Database J. Biol. Databases Curation, 2015
2014
ECMIS: computational approach for the identification of hotspots at protein-protein interfaces.
BMC Bioinform., 2014
3PFDB+: improved search protocol and update for the identification of representatives of protein sequence domain families.
Database J. Biol. Databases Curation, 2014
2013
Structural updates of alignment of protein domains and consequences on evolutionary models of domain superfamilies.
BioData Min., 2013
2012
PASS2 version 4: An update to the database of structure-based sequence alignments of structural domain superfamilies.
Nucleic Acids Res., 2012
Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome.
J. Clin. Bioinform., 2012
Re-visiting protein-centric two-tier classification of existing DNA-protein complexes.
BMC Bioinform., 2012
2011
Search for Protein Sequence Homologues that Display Considerable Domain Length Variations.
Int. J. Knowl. Discov. Bioinform., 2011
PASS2: A Database of Structure-Based Sequence Alignments of Protein Structural Domain Superfamilies.
Int. J. Knowl. Discov. Bioinform., 2011
Database J. Biol. Databases Curation, 2011
Critical assessment of structure-based sequence alignment methods at distant relationships.
Briefings Bioinform., 2011
A Three-Step Validation Following Genome-Wide Data Mining for Myosin Family Members Improves Search Efficiency.
Proceedings of the Data Mining Workshops (ICDMW), 2011
Mining Protein Sequence Databases for Remote Homologues That Can Display Considerable Domain Length Variations.
Proceedings of the Data Mining Workshops (ICDMW), 2011
Poster: HORIBALFRE: Higher Order Residue Interactions Based ALgorithm for Fold REcognition.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
2010
HORI: a web server to compute Higher Order Residue Interactions in protein structures.
BMC Bioinform., 2010
PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes.
BMC Bioinform., 2010
A Sequence Data Mining Protocol to Identify Best Representative Sequence for Protein Domain Families.
Proceedings of the ICDMW 2010, 2010
2009
3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach.
BioData Min., 2009
2008
MegaMotifBase: a database of structural motifs in protein families and superfamilies.
Nucleic Acids Res., 2008
Silico Biol., 2008
BMC Bioinform., 2008
2007
A machine learning approach for the identification of odorant binding proteins from sequence-derived properties.
BMC Bioinform., 2007
2006
Nucleic Acids Res., 2006
Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains.
Nucleic Acids Res., 2006
Enhanced Structure Prediction of Gene Products Containing Class III Adenylyl Cyclase Domains.
Silico Biol., 2006
Silico Biol., 2006
2005
Nucleic Acids Res., 2005
DIAL: a web-based server for the automatic identification of structural domains in proteins.
Nucleic Acids Res., 2005
SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs.
Nucleic Acids Res., 2005
FASSM: Enhanced Function Association in Whole Genome Analysis Using Sequence and Structural Motifs.
Silico Biol., 2005
2004
Nucleic Acids Res., 2004
Nucleic Acids Res., 2004
BMC Bioinform., 2004
PASS2: an automated database of protein alignments organised as structural superfamilies.
BMC Bioinform., 2004
2003
DDBASE2.0: updated domain database with improved identification of structural domains.
Bioinform., 2003
2002
SUPFAM - a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes.
Nucleic Acids Res., 2002
PASS2: a semi-automated database of Protein Alignments Organised as Structural Superfamilies.
Nucleic Acids Res., 2002