Mikhail Karasikov

According to our database, Mikhail Karasikov authored at least 10 papers between 2019 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Training state-of-the-art pathology foundation models with orders of magnitude less data.

Mikhail Karasikov, Joost van Doorn, Nicolas Känzig, Melis Erdal Cesur, Hugo Mark Horlings, Robert B. West, Fei Tang, Sebastian Otálora

CoRR, April, 2025

2024

Towards Large-Scale Training of Pathology Foundation Models.

kaiko ai, Nanne Aben, Edwin D. de Jong, Ioannis Gatopoulos, Nicolas Känzig, Mikhail Karasikov, Axel Lagré, Roman Moser, Joost van Doorn, Fei Tang

CoRR, 2024

Label-guided seed-chain-extend alignment on annotated De Bruijn graphs.

Harun Mustafa, Mikhail Karasikov, Nika Mansouri-Ghiasi, Gunnar Rätsch, André Kahles

Bioinform., 2024

2023

Scalable Annotated Genome Graphs for Representing Sequence Data.

Mikhail Karasikov

PhD thesis, 2023

2022

Lossless Indexing with Counting de Bruijn Graphs.

Mikhail Karasikov, Harun Mustafa, Gunnar Rätsch, André Kahles

Proceedings of the Research in Computational Molecular Biology, 2022

2021

Topology-based sparsification of graph annotations.

Daniel Danciu, Mikhail Karasikov, Harun Mustafa, André Kahles, Gunnar Rätsch

Bioinform., 2021

2020

Sparse Binary Relation Representations for Genome Graph Annotation.

Mikhail Karasikov, Harun Mustafa, Amir Joudaki, Sara Javadzadeh-No, Gunnar Rätsch, André Kahles

J. Comput. Biol., 2020

Communication-Efficient Jaccard similarity for High-Performance Distributed Genome Comparisons.

Maciej Besta, Raghavendra Kanakagiri, Harun Mustafa, Mikhail Karasikov, Gunnar Rätsch, Torsten Hoefler, Edgar Solomonik

Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2020

2019

Dynamic compression schemes for graph coloring.

Harun Mustafa, Ingo Schilken, Mikhail Karasikov, Carsten Eickhoff, Gunnar Rätsch, André Kahles

Bioinform., 2019

Smooth orientation-dependent scoring function for coarse-grained protein quality assessment.

Mikhail Karasikov, Guillaume Pagès, Sergei Grudinin

Bioinform., 2019