Mohammad M. Karimi

According to our database, Mohammad M. Karimi authored at least 14 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

ModEx: a general purpose computer model exploration system.

Hamid Younesy, Joseph Pober, Torsten Möller, Mohammad M. Karimi

Frontiers Bioinform., May, 2023

2021

iNucs: inter-nucleosome interactions.

Mehrdad Oveisi, Manu Shukla, Nogayhan Seymen, Masae Ohno, Yuichi Taniguchi, Sunil Nahata, Remco Loos, Ghulam J. Mufti, Robin C. Allshire, Stefan Dimitrov, Mohammad M. Karimi

Bioinform., 2021

2019

LIONS: analysis suite for detecting and quantifying transposable element initiated transcription from RNA-seq.

Artem Babaian, I. Richard Thompson, Jake Lever, Liane Gagnier, Mohammad M. Karimi, Dixie L. Mager

Bioinform., 2019

2016

ChAsE: chromatin analysis and exploration tool.

Hamid Younesy, Cydney B. Nielsen, Matthew C. Lorincz, Steven J. M. Jones, Mohammad M. Karimi, Torsten Möller

Bioinform., 2016

2015

VisRseq: R-based visual framework for analysis of sequencing data.

Hamid Younesy, Torsten Möller, Matthew C. Lorincz, Mohammad M. Karimi, Steven J. M. Jones

BMC Bioinform., December, 2015

2014

ALEA: a toolbox for allele-specific epigenomics analysis.

Hamid Younesy, Torsten Möller, Alireza Heravi Moussavi, Jeffrey B. Cheng, Joseph F. Costello, Matthew C. Lorincz, Mohammad M. Karimi, Steven J. M. Jones

Bioinform., 2014

2013

An Interactive Analysis and Exploration Tool for Epigenomic Data.

Hamid Younesy, Cydney B. Nielsen, Torsten Möller, Olivia Alder, Rebecca Cullum, Matthew C. Lorincz, Mohammad M. Karimi, Steven J. M. Jones

Comput. Graph. Forum, 2013

2010

Haplotype Inferring via Galled-Tree Networks Is NP-Complete.

Arvind Gupta, Mohammad M. Karimi, Ján Manuch, Ladislav Stacho, Xiaohong Zhao

J. Comput. Biol., 2010

Minimum cost homomorphisms to locally semicomplete digraphs and quasi-transitive digraphs.

Arvind Gupta, Gregory Z. Gutin, Mehdi Karimi, Eun Jung Kim, Arash Rafiey

Australas. J Comb., 2010

2009

Minimum Cost Homomorphism to Oriented Cycles with Some Loops.

Mehdi Karimi, Arvind Gupta

Proceedings of the Theory of Computing 2009, 2009

2008

Minimum Cost Homomorphisms to Reflexive Digraphs.

Arvind Gupta, Pavol Hell, Mehdi Karimi, Arash Rafiey

Proceedings of the LATIN 2008: Theoretical Informatics, 2008

Minimum Cost Homomorphism Dichotomy for Locally In-Semicomplete Digraphs.

Arvind Gupta, Mehdi Karimi, Eun Jung Kim, Arash Rafiey

Proceedings of the Combinatorial Optimization and Applications, 2008

2007

Minimum Cost Homomorphisms to Locally Semicomplete and Quasi-Transitive Digraphs

Arvind Gupta, Gregory Z. Gutin, Mehdi Karimi, Eun Jung Kim, Arash Rafiey

CoRR, 2007

Design of Artificial Tubular Protein Structures in 3D Hexagonal Prism Lattice Under HP Model.

Arvind Gupta, Mehdi Karimi, Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007