Nicholas D. Youngblut

According to our database, Nicholas D. Youngblut authored at least 6 papers between 2019 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity.

Zhufeng Li, Sandeep Suresh Cranganore, Nicholas D. Youngblut, Niki Kilbertus

Proceedings of the Thirty-Ninth AAAI Conference on Artificial Intelligence, 2025

2023

ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning.

Olga Mineeva, Daniel Danciu, Bernhard Schölkopf, Ruth E. Ley, Gunnar Rätsch, Nicholas D. Youngblut

PLoS Comput. Biol., 2023

2022

Interpreting tree ensemble machine learning models with endoR.

Albane Ruaud, Niklas Pfister, Ruth E. Ley, Nicholas D. Youngblut

PLoS Comput. Biol., December, 2022

2020

DeepMAsED: evaluating the quality of metagenomic assemblies.

Olga Mineeva, Mateo Rojas-Carulla, Ruth E. Ley, Bernhard Schölkopf, Nicholas D. Youngblut

Bioinform., 2020

Struo: a pipeline for building custom databases for common metagenome profilers.

Jacobo de la Cuesta-Zuluaga, Ruth E. Ley, Nicholas D. Youngblut

Bioinform., 2020

2019

GeNet: Deep Representations for Metagenomics.

Mateo Rojas-Carulla, Ilya O. Tolstikhin, Guillermo Luque, Nicholas D. Youngblut, Ruth E. Ley, Bernhard Schölkopf

CoRR, 2019