Paul Stothard

According to our database, Paul Stothard authored at least 21 papers between 2001 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

PlasMapper 3.0 - a web server for generating, editing, annotating and visualizing publication quality plasmid maps.

David S. Wishart, Leah Ren, Jacques Leong-Sit, Sukanta Saha, Jason R. Grant, Paul Stothard, Upasana Singh, Abby Kropielnicki, Eponine Oler, Harrison Peters, Vasuk Gautam

Nucleic Acids Res., July, 2023

PHASTEST: faster than PHASTER, better than PHAST.

David S. Wishart, Scott Han, Sukanta Saha, Eponine Oler, Harrison Peters, Jason R. Grant, Paul Stothard, Vasuk Gautam

Nucleic Acids Res., July, 2023

Proksee: in-depth characterization and visualization of bacterial genomes.

Jason R. Grant, Eric Enns, Eric Marinier, Arnab Mandal, Emily K. Herman, Chih-yu Chen, Morag Graham, Gary H. Van Domselaar, Paul Stothard

Nucleic Acids Res., July, 2023

2019

Visualizing and comparing circular genomes using the CGView family of tools.

Paul Stothard, Jason R. Grant, Gary H. Van Domselaar

Briefings Bioinform., 2019

2015

Whole genome SNP genotype piecemeal imputation.

Yining Wang, Tim Wylie, Paul Stothard, Guohui Lin

BMC Bioinform., 2015

2012

BacMap: an up-to-date electronic atlas of annotated bacterial genomes.

Joseph A. Cruz, Yifeng Liu, Yongjie Liang, You Zhou, Michael Wilson, Jonathan J. Dennis, Paul Stothard, Gary H. Van Domselaar, David S. Wishart

Nucleic Acids Res., 2012

2011

In-depth annotation of SNPs arising from resequencing projects using NGS-SNP.

Jason R. Grant, Adriano S. Arantes, Xiaoping Liao, Paul Stothard

Bioinform., 2011

2010

PROSESS: a protein structure evaluation suite and server.

Mark V. Berjanskii, Yongjie Liang, Jianjun Zhou, Peter Tang, Paul Stothard, You Zhou, Joseph A. Cruz, Cam Macdonell, Guohui Lin, Paul Lu, David S. Wishart

Nucleic Acids Res., 2010

Interactive microbial genome visualization with GView.

Aaron J. Petkau, Matthew Stuart-Edwards, Paul Stothard, Gary H. Van Domselaar

Bioinform., 2010

2009

Most parsimonious haplotype allele sharing determination.

Zhipeng Cai, Hadi Sabaa, Yining Wang, Randy Goebel, Zhiquan Wang, Jiaofen Xu, Paul Stothard, Guohui Lin

BMC Bioinform., 2009

2008

The CGView Server: a comparative genomics tool for circular genomes.

Jason R. Grant, Paul Stothard

Nucleic Acids Res., 2008

PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites.

Dean Cheng, Craig Knox, Nelson Young, Paul Stothard, Sambasivarao Damaraju, David S. Wishart

Nucleic Acids Res., 2008

2007

HMDB: the Human Metabolome Database.

David S. Wishart, Dan Tzur, Craig Knox, Roman Eisner, Anchi Guo, Nelson Young, Dean Cheng, Kevin Jewell, David Arndt, Summit Sawhney, Chris Fung, Lisa Nikolai, Mike Lewis, Marie-Aude Coutouly, Ian J. Forsythe, Peter Tang, Savita Shrivastava, Kevin Jeroncic, Paul Stothard, Godwin Amegbey, David Block, David D. Hau, James Wagner, Jessica Miniaci, Melisa Clements, Mulu Gebremedhin, Natalie Guo, Ying Zhang, Gavin E. Duggan, Glen D. MacInnis, Alim M. Weljie, Reza Dowlatabadi, Fiona Bamforth, Derrick Clive, Russell Greiner, Liang Li, Tom Marrie, Brian D. Sykes, Hans J. Vogel, Lori Querengesser

Nucleic Acids Res., 2007

Biospider: A Web Server for Automating Metabolome Annotations.

Craig Knox, Savita Shrivastava, Paul Stothard, Roman Eisner, David S. Wishart

Proceedings of the Biocomputing 2007, 2007

2006

DrugBank: a comprehensive resource for <i>in silico</i> drug discovery and exploration.

David S. Wishart, Craig Knox, Anchi Guo, Savita Shrivastava, Murtaza Hassanali, Paul Stothard, Zhan Chang, Jennifer Woolsey

Nucleic Acids Res., 2006

2005

BacMap: an interactive picture atlas of annotated bacterial genomes.

Paul Stothard, Gary H. Van Domselaar, Savita Shrivastava, Anchi Guo, Brian O'Neill, Joseph A. Cruz, Michael Ellison, David S. Wishart

Nucleic Acids Res., 2005

BASys: a web server for automated bacterial genome annotation.

Gary H. Van Domselaar, Paul Stothard, Savita Shrivastava, Joseph A. Cruz, Anchi Guo, Xiaoli Dong, Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart

Nucleic Acids Res., 2005

Circular genome visualization and exploration using CGView.

Paul Stothard, David S. Wishart

Bioinform., 2005

2004

The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli.

Shan Sundararaj, Anchi Guo, Bahram Habibi-Nazhad, Melania Rouani, Paul Stothard, Michael Ellison, David S. Wishart

Nucleic Acids Res., 2004

PlasMapper: a web server for drawing and auto-annotating plasmid maps.

Xiaoli Dong, Paul Stothard, Ian J. Forsythe, David S. Wishart

Nucleic Acids Res., 2004

2001

COMBOSA3D: combining sequence alignments with three-dimensional structures.

P. M. Stothard

Bioinform., 2001