Pemra Doruker

According to our database, Pemra Doruker authored at least 9 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Predicting allosteric pockets in protein biological assemblages.

Ambuj Kumar, Burak T. Kaynak, Karin S. Dorman, Pemra Doruker, Robert L. Jernigan

Bioinform., May, 2023

2021

ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python.

She Zhang, James Krieger, Yan Zhang, Cihan Kaya, Burak T. Kaynak, Karolina Mikulska-Ruminska, Pemra Doruker, Hongchun Li, Ivet Bahar

Bioinform., 2021

ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution.

Burak T. Kaynak, She Zhang, Ivet Bahar, Pemra Doruker

Bioinform., 2021

2019

Protein-Ligand Complexes as Constrained Dynamical Systems.

Burak T. Kaynak, Pemra Doruker

J. Chem. Inf. Model., 2019

2013

Substrate Effect on Catalytic Loop and Global Dynamics of Triosephosphate Isomerase.

Zeynep Kurkcuoglu, Pemra Doruker

Entropy, 2013

2012

Coupling between Catalytic Loop Motions and Enzyme Global Dynamics.

Zeynep Kurkcuoglu, Ahmet Bakan, Duygu Kocaman, Ivet Bahar, Pemra Doruker

PLoS Comput. Biol., 2012

2011

Effect of ligand binding on the intraminimum dynamics of proteins.

Burak Alakent, Sena Baskan, Pemra Doruker

J. Comput. Chem., 2011

2007

Mimicking Protein Dynamics by the Integration of Elastic Network Model with Time Series Analysis.

Burak Alakent, Mehmet C. Camurdan, Pemra Doruker

Int. J. High Perform. Comput. Appl., 2007

2002

Dynamics of large proteins through hierarchical levels of coarse-grained structures.

Pemra Doruker, Robert L. Jernigan, Ivet Bahar

J. Comput. Chem., 2002