Petr Sulc

According to our database, Petr Sulc authored at least 14 papers between 2010 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations.

Zhengyue Zhang, Jirí Sponer, Giovanni Bussi, Vojtech Mlýnský, Petr Sulc, Chad R. Simmons, Nicholas Stephanopoulos, Miroslav Krepl

J. Chem. Inf. Model., May, 2023

oxDNA: coarse-grained simulations of nucleic acids made simple.

Erik Poppleton, Michael Matthies, Debesh Mandal, Flavio Romano, Petr Sulc, Lorenzo Rovigatti

J. Open Source Softw., January, 2023

Coarse-Grained Simulations Of Dna And Rna Systems With Oxdna And Oxrna Models: Tutorial.

Matthew L. Sample, Michael Matthies, Petr Sulc

Proceedings of the Winter Simulation Conference, 2023

2022

Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection.

Andrea Di Gioacchino, Jonah Procyk, Marco Molari, John S. Schreck, Yu Zhou, Yan Liu, Rémi Monasson, Simona Cocco, Petr Sulc

PLoS Comput. Biol., September, 2022

Nanobase.org: a repository for DNA and RNA nanostructures.

Erik Poppleton, Aatmik Mallya, Swarup Dey, Joel Joseph, Petr Sulc

Nucleic Acids Res., 2022

ExpertRNA: A New Framework for RNA Secondary Structure Prediction.

Menghan Liu, Erik Poppleton, Giulia Pedrielli, Petr Sulc, Dimitri P. Bertsekas

INFORMS J. Comput., 2022

2021

OxDNA.org: a public webserver for coarse-grained simulations of DNA and RNA nanostructures.

Erik Poppleton, Roger Romero, Aatmik Mallya, Lorenzo Rovigatti, Petr Sulc

Nucleic Acids Res., 2021

2019

TacoxDNA: A user-friendly web server for simulations of complex DNA structures, from single strands to origami.

Antonio Suma, Erik Poppleton, Michael Matthies, Petr Sulc, Flavio Romano, Ard A. Louis, Jonathan P. K. Doye, Cristian Micheletti, Lorenzo Rovigatti

J. Comput. Chem., 2019

2017

Pre-stressed rubber material constant estimation for resilient wheel application.

Petr Sulc, Ludek Pesek, Vítezslav Bula, Jan Cibulka, Tomás Bohác, Hubert Tasek

Adv. Eng. Softw., 2017

2015

A comparison between parallelization approaches in molecular dynamics simulations on GPUs.

Lorenzo Rovigatti, Petr Sulc, István Z. Reguly, Flavio Romano

J. Comput. Chem., 2015

2014

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model.

Petr Sulc, Thomas E. Ouldridge, Flavio Romano, Jonathan P. K. Doye, Ard A. Louis

Nat. Comput., 2014

2013

Optimal Distributed Control of Reactive Power via the Alternating Direction Method of Multipliers.

Petr Sulc, Scott Backhaus, Michael Chertkov

CoRR, 2013

2011

Options for Control of Reactive Power by Distributed Photovoltaic Generators.

Konstantin S. Turitsyn, Petr Sulc, Scott Backhaus, Michael Chertkov

Proc. IEEE, 2011

2010

Quantifying Slow Evolutionary Dynamics in RNA Fitness Landscapes.

Petr Sulc, Andreas Wagner, Olivier C. Martin

J. Bioinform. Comput. Biol., 2010