Pralay Mitra

According to our database, Pralay Mitra authored at least 16 papers between 2009 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

GDEGAN: Gaussian Dynamic Equivariant Graph Attention Network for Ligand Binding Site Prediction.

Animesh, Plaban Kumar Bhowmick, Pralay Mitra

CoRR, March, 2026

PEPpip: A Vision-Inspired Explainable Deep Learning Framework for Sequence-Based Protein-Protein Interaction Prediction and Interaction Map Estimation.

Shubhrangshu Ghosh, Pralay Mitra

IEEE Access, 2026

2025

E(Q)AGNN-PPIS: Attention Enhanced Equivariant Graph Neural Network for Protein-Protein Interaction Site Prediction.

Animesh, Rishi Suvvada, Plaban Kumar Bhowmick, Pralay Mitra

IEEE Trans. Signal Inf. Process. over Networks, 2025

ConfPred: ML-Based Conformational B-cell Epitope Prediction Using Novel Features.

Purnima Gautam, Pralay Mitra

Proceedings of the 12th International Conference on Bioinformatics Research and Applications, 2025

2024

MaTPIP: A deep-learning architecture with eXplainable AI for sequence-driven, feature mixed protein-protein interaction prediction.

Shubhrangshu Ghosh, Pralay Mitra

Comput. Methods Programs Biomed., 2024

2021

An Evolutionary Profile Guided Greedy Parallel Replica-Exchange Monte Carlo Search Algorithm for Rapid Convergence in Protein Design.

Anupam Banerjee, Kuntal Pal, Pralay Mitra

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

High-Performance Whole-Cell Simulation Exploiting Modular Cell Biology Principles.

Barnali Das, Pralay Mitra

J. Chem. Inf. Model., 2021

2020

Estimating the Effect of Single-Point Mutations on Protein Thermodynamic Stability and Analyzing the Mutation Landscape of the p53 Protein.

Anupam Banerjee, Pralay Mitra

J. Chem. Inf. Model., 2020

Estimating Change in Foldability Due to Multipoint Deletions in Protein Structures.

Anupam Banerjee, Amit Kumar, Kushal Kanti Ghosh, Pralay Mitra

J. Chem. Inf. Model., 2020

2019

A network-based zoning for parallel whole-cell simulation.

Barnali Das, Abhijeet Rajendra Patil, Pralay Mitra

Bioinform., 2019

Cluster-Based Relative Outlier Under-Sampling Technique.

Atif Hassan, Rohini Banerjee, Pabitra Mitra, Pralay Mitra

Proceedings of the Advances in Data Mining, 2019

2013

An Evolution-Based Approach to <i>De Novo</i> Protein Design and Case Study on <i>Mycobacterium tuberculosis</i>.

Pralay Mitra, David Shultis, Jeffrey R. Brender, Jeff Czajka, David Marsh, Felicia Gray, Tomasz Cierpicki, Yang Zhang

PLoS Comput. Biol., 2013

EvoDesign: <i>de novo</i> protein design based on structural and evolutionary profiles.

Pralay Mitra, David Shultis, Yang Zhang

Nucleic Acids Res., 2013

2011

PRUNE and PROBE - two modular web services for protein-protein docking.

Pralay Mitra, Debnath Pal

Nucleic Acids Res., 2011

Using correlated parameters for improved ranking of protein-protein docking decoys.

Pralay Mitra, Debnath Pal

J. Comput. Chem., 2011

2009

Interface of Apoptotic Protein Complexes Has Distinct Properties.

Pralay Mitra, Riddhiman Dhar, Debnath Pal

Silico Biol., 2009