Robin B. Gasser

According to our database, Robin B. Gasser authored at least 19 papers between 2007 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

SCREEN: A Graph-based Contrastive Learning Tool to Infer Catalytic Residues and Assess Enzyme Mutations.

Tong Pan, Yue Bi, Xiaoyu Wang, Ying Zhang, Geoffrey I. Webb, Robin B. Gasser, Lukasz A. Kurgan, Jiangning Song

Genom. Proteom. Bioinform., 2025

scRCA: A Siamese network-based pipeline for annotating cell types using noisy single-cell RNA-seq reference data.

Yan Liu, Chen Li, Long-Chen Shen, He Yan, Guo Wei, Robin B. Gasser, Xiaohua Hu, Jiangning Song, Dong-Jun Yu

Comput. Biol. Medicine, 2025

2024

'Bingo' - a large language model- and graph neural network-based workflow for the prediction of essential genes from protein data.

Jiani Ma, Jiangning Song, Neil D. Young, Bill C. H. Chang, Pasi K. Korhonen, Tulio L. Campos, Hui Liu, Robin B. Gasser

Briefings Bioinform., 2024

2023

Deep domain adversarial neural network for the deconvolution of cell type mixtures in tissue proteome profiling.

Fang Wang, Fan Yang, Longkai Huang, Wei Li, Jiangning Song, Robin B. Gasser, Ruedi Aebersold, Guohua Wang, Jianhua Yao

Nat. Mac. Intell., October, 2023

Digerati - A multipath parallel hybrid deep learning framework for the identification of mycobacterial PE/PPE proteins.

Fuyi Li, Xudong Guo, Yue Bi, Runchang Jia, Miranda E. Pitt, Shirui Pan, Shuqin Li, Robin B. Gasser, Lachlan J. M. Coin, Jiangning Song

Comput. Biol. Medicine, September, 2023

TripletCell: a deep metric learning framework for accurate annotation of cell types at the single-cell level.

Yan Liu, Guo Wei, Chen Li, Long-Chen Shen, Robin B. Gasser, Jiangning Song, Dijun Chen, Dong-Jun Yu

Briefings Bioinform., May, 2023

PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships.

Tong Pan, Chen Li, Yue Bi, Zhikang Wang, Robin B. Gasser, Anthony W. Purcell, Tatsuya Akutsu, Geoffrey I. Webb, Seiya Imoto, Jiangning Song

Bioinform., March, 2023

2022

<i>iFeatureOmega: </i> an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets.

Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Chris Bain, Robin B. Gasser, Junzhou Li, Zuoren Yang, Xin Gao, Lukasz A. Kurgan, Jiangning Song

Nucleic Acids Res., 2022

PROST: AlphaFold2-aware Sequence-Based Predictor to Estimate Protein Stability Changes upon Missense Mutations.

Shahid Iqbal, Fang Ge, Fuyi Li, Tatsuya Akutsu, Yuanting Zheng, Robin B. Gasser, Dong-Jun Yu, Geoffrey I. Webb, Jiangning Song

J. Chem. Inf. Model., 2022

DEMoS: a deep learning-based ensemble approach for predicting the molecular subtypes of gastric adenocarcinomas from histopathological images.

Yanan Wang, Changyuan Hu, Terry Kwok, Christopher A. Bain, Xiangyang Xue, Robin B. Gasser, Geoffrey I. Webb, Alex Boussioutas, Xian Shen, Roger J. Daly, Jiangning Song

Bioinform., 2022

2021

OGEE v3: Online GEne Essentiality database with increased coverage of organisms and human cell lines.

Sanathoi Gurumayum, Puzi Jiang, Xiaowen Hao, Tulio de Lima Campos, Neil D. Young, Pasi K. Korhonen, Robin B. Gasser, Peer Bork, Xing-Ming Zhao, Lijie He, Wei-Hua Chen

Nucleic Acids Res., 2021

2019

DRfit: a Java tool for the analysis of discrete data from multi-well plate assays.

Andreas Hofmann, Sarah Preston, Megan Cross, H. M. P. Dilrukshi Herath, Anne Simon, Robin B. Gasser

BMC Bioinform., 2019

2015

A practical Java tool for small-molecule compound appraisal.

Parisa Amani, Todd Sneyd, Sarah Preston, Neil D. Young, Lyndel Mason, Ulla-Maja Bailey, Jonathan B. Baell, David Camp, Robin B. Gasser, Alain-Dominique Gorse, Paul Taylor, Andreas Hofmann

J. Cheminformatics, 2015

2013

SchistoDB: an updated genome resource for the three key schistosomes of humans.

Adhemar Zerlotini, Eric R. G. R. Aguiar, Fudong Yu, Huayong Xu, Yixue Li, Neil D. Young, Robin B. Gasser, Anna V. Protasio, Matthew Berriman, David S. Roos, Jessica C. Kissinger, Guilherme C. Oliveira

Nucleic Acids Res., 2013

2012

TranSeqAnnotator: large-scale analysis of transcriptomic data.

Ranjeeta Menon, Gagan Garg, Robin B. Gasser, Shoba Ranganathan

BMC Bioinform., 2012

SBAL: a practical tool to generate and edit structure-based amino acid sequence alignments.

Conan K. Wang, Ursula Broder, Saroja K. Weeratunga, Robin B. Gasser, Alex Loukas, Andreas Hofmann

Bioinform., 2012

2008

<i>In silico </i>analysis of expressed sequence tags from <i>Trichostrongylus vitrinus </i>(Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches.

Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair J. Nisbet, Shoba Ranganathan

BMC Bioinform., 2008

2007

ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.

Shivashankar H. Nagaraj, Nandan Deshpande, Robin B. Gasser, Shoba Ranganathan

Nucleic Acids Res., 2007

A hitchhiker's guide to expressed sequence tag (EST) analysis.

Shivashankar H. Nagaraj, Robin B. Gasser, Shoba Ranganathan

Briefings Bioinform., 2007