Shoba Ranganathan

According to our database1, Shoba Ranganathan authored at least 63 papers between 2001 and 2019.

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Bibliography

2019
Host-Pathogen Interactions.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

Genome Databases and Browsers.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Preface.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Identification of Proteins From Proteomic Analysis.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

Quantification of Proteins From Proteomic Analysis.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

Rational Structure-Based Drug Design.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Protocol for Protein Structure Modelling.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

Structure-Based Drug Design Workflow.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

Diverse dynamics features of novel protein kinase C (PKC) isozymes determine the selectivity of a fluorinated balanol analogue for PKCε.
BMC Bioinform., 2019

iSwathX: an interactive web-based application for extension of DIA peptide reference libraries.
Bioinform., 2019

2018
Molecular Dynamics Pinpoint the Global Fluorine Effect in Balanoid Binding to PKCε and PKA.
J. Chem. Inf. Model., 2018

2017
Exploration of charge states of balanol analogues acting as ATP-competitive inhibitors in kinases.
BMC Bioinform., 2017

2016
Bioinformatics and systems biology research update from the 15th International Conference on Bioinformatics (InCoB2016).
BMC Bioinform., 2016

2015
Introduction to selected papers from GIW/InCoB 2015.
J. Bioinform. Comput. Biol., 2015

2014
InCoB2014: Systems Biology update from the Asia-Pacific.
BMC Syst. Biol., 2014

InCoB2014: bioinformatics to tackle the data to knowledge challenge.
BMC Bioinform., 2014

2013
APBioNet - Transforming Bioinformatics in the Asia-Pacific Region.
PLoS Comput. Biol., 2013

InCoB2013 introduces Systems Biology as a major conference theme.
BMC Syst. Biol., 2013

Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework.
BMC Syst. Biol., 2013

2012
InCoB2012 Conference: from biological data to knowledge to technological breakthroughs.
BMC Bioinform., 2012

TranSeqAnnotator: large-scale analysis of transcriptomic data.
BMC Bioinform., 2012

2011
Structural diversity of biologically interesting datasets: a scaffold analysis approach.
J. Cheminformatics, 2011

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference.
BMC Bioinform., 2011

In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance.
BMC Bioinform., 2011

MPID-T2: a database for sequence-structure-function analyses of pMHC and TR/pMHC structures.
Bioinform., 2011

Towards BioDBcore: a community-defined information specification for biological databases.
Database J. Biol. Databases Curation, 2011

2010
InCoB2010 - 9<sup>th </sup>International Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010.
BMC Bioinform., 2010

Network analysis of human protein location.
BMC Bioinform., 2010

Biomarker information extraction tool (BIET) development using natural language processing and machine learning.
Proceedings of the ICWET '10 International Conference & Workshop on Emerging Trends in Technology, Mumbai, Maharashtra, India, February 26, 2010

2009
Towards a career in bioinformatics.
BMC Bioinform., 2009

Physicochemical property space distribution among human metabolites, drugs and toxins.
BMC Bioinform., 2009

A comprehensive assessment of N-terminal signal peptides prediction methods.
BMC Bioinform., 2009

2008
Emerging strengths in Asia Pacific bioinformatics.
BMC Bioinform., 2008

Bioinformatics research in the Asia Pacific: a 2007 update.
BMC Bioinform., 2008

<i>In silico </i>analysis of expressed sequence tags from <i>Trichostrongylus vitrinus </i>(Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches.
BMC Bioinform., 2008

Tandem duplication, circular permutation, molecular adaptation: how <i>Solanaceae </i>resist pests <i>via </i>inhibitors.
BMC Bioinform., 2008

CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge.
BMC Bioinform., 2008

Modeling <i>Escherichia coli </i>signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage.
BMC Bioinform., 2008

Flanking signal and mature peptide residues influence signal peptide cleavage.
BMC Bioinform., 2008

Critical technologies for bioinformatics.
Briefings Bioinform., 2008

2007
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.
Nucleic Acids Res., 2007

A Workflow for Mutation Extraction and Structure Annotation.
J. Bioinform. Comput. Biol., 2007

CASVM: web server for SVM-based prediction of caspase substrates cleavage sites.
Bioinform., 2007

<i>In silico</i> grouping of peptide/HLA class I complexes using structural interaction characteristics.
Bioinform., 2007

Methods and protocols for prediction of immunogenic epitopes.
Briefings Bioinform., 2007

A hitchhiker's guide to expressed sequence tag (EST) analysis.
Briefings Bioinform., 2007

2006
OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI.
Nucleic Acids Res., 2006

ASGS: an alternative splicing graph web service.
Nucleic Acids Res., 2006

SVM-based prediction of caspase substrate cleavage sites.
BMC Bioinform., 2006

Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6- associated Pemphigus vulgaris.
BMC Bioinform., 2006

Establishing bioinformatics research in the Asia Pacific.
BMC Bioinform., 2006

Prediction of HLA-DQ3.2ß Ligands: evidence of multiple registers in class II binding peptides.
Bioinform., 2006

2005
Bioinformatics Education - Perspectives and Challenges.
PLoS Comput. Biol., 2005

SPdb - a signal peptide database.
BMC Bioinform., 2005

MVC Architecture in Bioinformatics web applications and its Java implementation.
Proceedings of the iiWAS'2005, 2005

2004
SDPMOD: an automated comparative modeling server for small disulfide-bonded proteins.
Nucleic Acids Res., 2004

Xpro: database of eukaryotic protein-encoding genes.
Nucleic Acids Res., 2004

DEDB: a database of <i>Drosophila melanogaster </i>exons in splicing graph form.
BMC Bioinform., 2004

Delineation of modular proteins: Domain boundary prediction from sequence information.
Briefings Bioinform., 2004

2003
MGAlignIt: a web service for the alignment of mRNA/EST and genomic sequences.
Nucleic Acids Res., 2003

XdomView: protein domain and exon position visualization.
Bioinform., 2003

MPID: MHC-Peptide Interaction Database for sequence-structure-function information on peptides binding to MHC molecules.
Bioinform., 2003

2001
Challenges for Intelligent Systems in Biology.
IEEE Intell. Syst., 2001


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