Ronny Lorenz

Orcid: 0000-0002-2144-698X

Affiliations:

University of Vienna, Institute for Theoretical Chemistry, Austria

According to our database¹, Ronny Lorenz authored at least 22 papers between 2008 and 2023.

Collaborative distances:

Dijkstra number² of five.
Erdős number³ of four.

Timeline

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In proceedings

Article

PhD thesis

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Bibliography

2023

Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package.

[BibT_eX]

[DOI]

Algorithms Mol. Biol., December, 2023

Modified RNAs and predictions with the ViennaRNA Package.

[BibT_eX]

[DOI]

Bioinform., November, 2023

Local RNA folding revisited.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., August, 2023

<tt>DrTransformer</tt>: heuristic cotranscriptional RNA folding using the nearest neighbor energy model.

[BibT_eX]

[DOI]

Stefan Badelt

Ronny Lorenz

Ivo L. Hofacker

Bioinform., January, 2023

Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 19th International Symposium, 2023

2022

Caveats to Deep Learning Approaches to RNA Secondary Structure Prediction.

[BibT_eX]

[DOI]

Frontiers Bioinform., 2022

2021

RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes.

[BibT_eX]

[DOI]

Bioinform., 2021

2020

Efficient Algorithms for Co-folding of Multiple RNAs.

[BibT_eX]

[DOI]

Proceedings of the Biomedical Engineering Systems and Technologies, 2020

Efficient Computation of Base-pairing Probabilities in Multi-strand RNA Folding.

[BibT_eX]

[DOI]

Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020), 2020

2019

Evolving AVX512 Parallel C Code Using GP.

[BibT_eX]

[DOI]

William B. Langdon

Ronny Lorenz

Proceedings of the Genetic Programming - 22nd European Conference, 2019

2018

Evolving Better RNAfold Structure Prediction.

[BibT_eX]

[DOI]

William B. Langdon

Justyna Petke

Ronny Lorenz

Proceedings of the Genetic Programming - 21st European Conference, 2018

2017

Improving SSE parallel code with grow and graft genetic programming.

[BibT_eX]

[DOI]

William B. Langdon

Ronny Lorenz

Proceedings of the Genetic and Evolutionary Computation Conference, 2017

2016

SHAPE directed RNA folding.

[BibT_eX]

[DOI]

Bioinform., 2016

RNA folding with hard and soft constraints.

[BibT_eX]

[DOI]

Ronny Lorenz

Ivo L. Hofacker

Peter F. Stadler

Algorithms Mol. Biol., 2016

2015

Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA.

[BibT_eX]

[DOI]

Christopher A. Lavender

PLoS Comput. Biol., 2015

2014

TSSAR: TSS annotation regime for dRNA-seq data.

[BibT_eX]

[DOI]

BMC Bioinform., 2014

2013

2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction.

[BibT_eX]

[DOI]

Ronny Lorenz

Stephan H. Bernhart

Jing Qin

Christian Höner zu Siederdissen

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

2012

Folding RNA/DNA hybrid duplexes.

[BibT_eX]

[DOI]

Ronny Lorenz

Ivo L. Hofacker

Stephan H. Bernhart

Bioinform., 2012

RNA Folding Algorithms with G-Quadruplexes.

[BibT_eX]

[DOI]

Christian Höner zu Siederdissen

Fabian Amman

Ivo L. Hofacker

Peter F. Stadler

Proceedings of the Advances in Bioinformatics and Computational Biology, 2012

2011

ViennaRNA Package 2.0.

[BibT_eX]

[DOI]

Ronny Lorenz

Stephan H. Bernhart

Christian Höner zu Siederdissen

Algorithms Mol. Biol., 2011

2009

2D Projections of RNA Folding Landscapes.

[BibT_eX]

[DOI]

Ronny Lorenz

Christoph Flamm

Ivo L. Hofacker

Proceedings of the German Conference on Bioinformatics 2009, 2009

2008

The Vienna RNA Websuite.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2008

Ronny Lorenz

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