Ryuichiro Nakato

According to our database, Ryuichiro Nakato authored at least 7 papers between 2008 and 2025.

Collaborative distances:

• Dijkstra number of six.
• Erdős number of five.

2025

ShortCake: an integrated platform for efficient and reproducible single-cell analysis.

Ryuichiro Nakato, Luis Augusto Eijy Nagai

Bioinform., 2025

2023

CohesinDB: a comprehensive database for decoding cohesin-related epigenomes, 3D genomes and transcriptomes in human cells.

Jiankang Wang, Ryuichiro Nakato

Nucleic Acids Res., January, 2023

2022

HiC1Dmetrics: framework to extract various one-dimensional features from chromosome structure data.

Jiankang Wang, Ryuichiro Nakato

Briefings Bioinform., 2022

2018

Sensitive and robust assessment of ChIP-seq read distribution using a strand-shift profile.

Ryuichiro Nakato, Katsuhiko Shirahige

Bioinform., 2018

2017

Recent advances in ChIP-seq analysis: from quality management to whole-genome annotation.

Ryuichiro Nakato, Katsuhiko Shirahige

Briefings Bioinform., 2017

2010

Cgaln: fast and space-efficient whole-genome alignment.

Ryuichiro Nakato, Osamu Gotoh

BMC Bioinform., 2010

2008

A Novel Method for Reducing Computational Complexity of Whole Genome Sequence Alignment.

Ryuichiro Nakato, Osamu Gotoh

Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008