Sebastian Kmiecik

According to our database, Sebastian Kmiecik authored at least 17 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2024

Structure prediction of linear and cyclic peptides using CABS-flex.

Aleksandra E. Badaczewska-Dawid, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik

Briefings Bioinform., January, 2024

2022

MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes.

Aleksandra E. Badaczewska-Dawid, Chandran Nithin, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik

Nucleic Acids Res., 2022

A3D database: structure-based predictions of protein aggregation for the human proteome.

Aleksandra E. Badaczewska-Dawid, Javier Garcia-Pardo, Aleksander Kuriata, Jordi Pujols, Salvador Ventura, Sebastian Kmiecik

Bioinform., 2022

2021

Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinement.

Aleksandra E. Badaczewska-Dawid, Sebastian Kmiecik, Michal Kolinski

Briefings Bioinform., 2021

2019

Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility.

Aleksander Kuriata, Valentin Iglesias, Jordi Pujols, Mateusz Kurcinski, Sebastian Kmiecik, Salvador Ventura

Nucleic Acids Res., 2019

Aggrescan3D standalone package for structure-based prediction of protein aggregation properties.

Aleksander Kuriata, Valentin Iglesias, Mateusz Kurcinski, Salvador Ventura, Sebastian Kmiecik

Bioinform., 2019

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility.

Mateusz Kurcinski, Tymoteusz Oleniecki, Maciej Pawel Ciemny, Aleksander Kuriata, Andrzej Kolinski, Sebastian Kmiecik

Bioinform., 2019

CABS-dock standalone: a toolbox for flexible protein-peptide docking.

Mateusz Kurcinski, Maciej Pawel Ciemny, Tymoteusz Oleniecki, Aleksander Kuriata, Aleksandra E. Badaczewska-Dawid, Andrzej Kolinski, Sebastian Kmiecik

Bioinform., 2019

Protein-peptide docking using CABS-dock and contact information.

Maciej Blaszczyk, Maciej Pawel Ciemny, Andrzej Kolinski, Mateusz Kurcinski, Sebastian Kmiecik

Briefings Bioinform., 2019

2018

CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures.

Aleksander Kuriata, Aleksandra Maria Gierut, Tymoteusz Oleniecki, Maciej Pawel Ciemny, Andrzej Kolinski, Mateusz Kurcinski, Sebastian Kmiecik

Nucleic Acids Res., 2018

2016

Coarse-Grained Simulations of Membrane Insertion and Folding of Small Helical Proteins Using the CABS Model.

Wojciech Pulawski, Michal Jamróz, Michal Kolinski, Andrzej Kolinski, Sebastian Kmiecik

J. Chem. Inf. Model., 2016

2015

AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures.

Rafael Zambrano, Michal Jamróz, Agata Szczasiuk, Jordi Pujols, Sebastian Kmiecik, Salvador Ventura

Nucleic Acids Res., 2015

CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site.

Mateusz Kurcinski, Michal Jamróz, Maciej Blaszczyk, Andrzej Kolinski, Sebastian Kmiecik

Nucleic Acids Res., 2015

2014

CABS-flex predictions of protein flexibility compared with NMR ensembles.

Michal Jamróz, Andrzej Kolinski, Sebastian Kmiecik

Bioinform., 2014

2013

CABS-flex: server for fast simulation of protein structure fluctuations.

Michal Jamróz, Andrzej Kolinski, Sebastian Kmiecik

Nucleic Acids Res., 2013

CABS-fold: server for the <i>de novo</i> and consensus-based prediction of protein structure.

Maciej Blaszczyk, Michal Jamróz, Sebastian Kmiecik, Andrzej Kolinski

Nucleic Acids Res., 2013

2007

Backbone building from quadrilaterals: A fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates.

Dominik Gront, Sebastian Kmiecik, Andrzej Kolinski

J. Comput. Chem., 2007