Sharmila S. Mande

According to our database, Sharmila S. Mande authored at least 20 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

BactInt: A domain driven transfer learning approach for extracting inter-bacterial associations from biomedical text.

Krishanu Das Baksi, Vatsala Pokhrel, Anand Eruvessi Pudavar, Sharmila S. Mande, Bhusan K. Kuntal

Comput. Biol. Chem., 2024

2023

BactInt: A domain driven transfer learning approach and a corpus for extracting inter-bacterial interactions from biomedical text.

Krishanu Das Baksi, Vatsala Pokhrel, Bhusan K. Kuntal, Sharmila S. Mande

CoRR, 2023

2021

NetSets.js: a JavaScript framework for compositional assessment and comparison of biological networks through Venn-integrated network diagrams.

Sunil Nagpal, Bhusan K. Kuntal, Sharmila S. Mande

Bioinform., 2021

Utilizing domain-based features to improve classification accuracy of biomedical text having bacterial associations.

Vatsala Pokhrel, Bhusan K. Kuntal, Divyanshu Srivastava, Sharmila S. Mande, Krishanu Das Baksi

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

MetagenoNets: comprehensive inference and meta-insights for microbial correlation networks.

Sunil Nagpal, Rashmi Singh, Deepak Yadav, Sharmila S. Mande

Nucleic Acids Res., 2020

FunGeCo: a web-based tool for estimation of functional potential of bacterial genomes and microbiomes using gene context information.

Swadha Anand, Bhusan K. Kuntal, Anwesha Mohapatra, Vineet Bhatt, Sharmila S. Mande

Bioinform., 2020

2019

Correction to: CompNet: a GUI based tool for comparison of multiple biological interaction networks.

Bhusan K. Kuntal, Anirban Dutta, Sharmila S. Mande

BMC Bioinform., 2019

2017

Web-igloo: a web based platform for multivariate data visualization.

Bhusan K. Kuntal, Sharmila S. Mande

Bioinform., 2017

2016

CompNet: a GUI based tool for comparison of multiple biological interaction networks.

Bhusan K. Kuntal, Anirban Dutta, Sharmila S. Mande

BMC Bioinform., 2016

2015

Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly.

Tarini Shankar Ghosh, Varun Mehra, Sharmila S. Mande

J. Bioinform. Comput. Biol., 2015

FQC: A novel approach for efficient compression, archival, and dissemination of fastq datasets.

Anirban Dutta, Mohammed Monzoorul Haque, Tungadri Bose, Ch. V. Siva K. Reddy, Sharmila S. Mande

J. Bioinform. Comput. Biol., 2015

2012

DELIMINATE - a fast and efficient method for loss-less compression of genomic sequences: Sequence analysis.

Monzoorul Haque Mohammed, Anirban Dutta, Tungadri Bose, Sudha Chadaram, Sharmila S. Mande

Bioinform., 2012

Classification of metagenomic sequences: methods and challenges.

Sharmila S. Mande, Monzoorul Haque Mohammed, Tarini Shankar Ghosh

Briefings Bioinform., 2012

2011

HabiSign: a novel approach for comparison of metagenomes and rapid identification of habitat-specific sequences.

Tarini Shankar Ghosh, Monzoorul Haque Mohammed, Hannah Rajasingh, Sudha Chadaram, Sharmila S. Mande

BMC Bioinform., 2011

SPHINX - an algorithm for taxonomic binning of metagenomic sequences.

Monzoorul Haque Mohammed, Tarini Shankar Ghosh, Nitin Kumar Singh, Sharmila S. Mande

Bioinform., 2011

2010

DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences.

Tarini Shankar Ghosh, Monzoorul Haque Mohammed, Sharmila S. Mande

BMC Bioinform., 2010

2009

Mathematical Modeling of Regulation of Type III Secretion System in Salmonella enterica Serovar Typhimurium by SirA.

Aparna B. Ganesh, Hannah Rajasingh, Sharmila S. Mande

Silico Biol., 2009

SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences.

Mohammed Monzoorul Haque, Tarini Shankar Ghosh, Dinakar Komanduri, Sharmila S. Mande

Bioinform., 2009

2008

The 4M (Mixed Memory Markov Model) Algorithm for Finding Genes in Prokaryotic Genomes.

Mathukumalli Vidyasagar, Sharmila S. Mande, Ch. V. Siva K. Reddy, V. V. Raja Rao

IEEE Trans. Autom. Control., 2008

2007

Identification of compositionally distinct regions in genomes using the centroid method.

Issaac Rajan, Sarang Aravamuthan, Sharmila S. Mande

Bioinform., 2007