Siwei Xu

According to our database, Siwei Xu authored at least 13 papers between 2022 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2026

Towards balancing the efficiency and effectiveness: a unified edit-based framework for automatic image captioning.

Ruifan Li, Siwei Xu, Pengyue Lin, Fangxiang Feng, Zhangyu Ma

Multim. Syst., April, 2026

OX-MABSR: A Benchmark for Open-domain Explainable Multimodal Aspect-Based Sentiment Reasoning.

Xinjing Liu, Zixin Xue, Pengyue Lin, Xinyu Tu, Siwei Xu, Ruifan Li

Proceedings of the Fortieth AAAI Conference on Artificial Intelligence, 2026

2025

Single-cell omics arena: evaluation of large language models for automatic cell-type annotations on single-cell omics data via RNA-seq bridging.

Junhao Liu, Siwei Xu, Yongxian Wu, Jing Zhang

Briefings Bioinform., 2025

A Generative Method with Elements Enhancement for Comparative Opinion Quintuple Extraction.

Shuqin Ye, Xinjing Liu, Siwei Xu, Yongjun Huang, Xiaojie Wang, Ruifan Li

Proceedings of the IEEE International Conference on Data Mining, 2025

2024

scENCORE: leveraging single-cell epigenetic data to predict chromatin conformation using graph embedding.

Ziheng Duan, Siwei Xu, Shushrruth Sai Srinivasan, Ahyeon Hwang, Cheyu Lee, Feng Yue, Mark Gerstein, Yu Luan, Matthew J. Girgenti, Jing Zhang

Briefings Bioinform., March, 2024

Single-Cell Omics Arena: A Benchmark Study for Large Language Models on Cell Type Annotation Using Single-Cell Data.

Junhao Liu, Siwei Xu, Lei Zhang, Jing Zhang

CoRR, 2024

scACT: Accurate Cross-modality Translation via Cycle-consistent Training from Unpaired Single-cell Data.

Siwei Xu, Junhao Liu, Jing Zhang

Proceedings of the 33rd ACM International Conference on Information and Knowledge Management, 2024

iMIRACLE: An Iterative Multi-View Graph Neural Network to Model Intercellular Gene Regulation From Spatial Transcriptomic Data.

Ziheng Duan, Siwei Xu, Cheyu Lee, Dylan Riffle, Jing Zhang

Proceedings of the 33rd ACM International Conference on Information and Knowledge Management, 2024

iHAST: Integrating Hybrid Attention for Super-Resolution in Spatial Transcriptomics.

Xi Li, Jing Zhang, Ziheng Duan, Yi Dai, Siwei Xu

Proceedings of the 35th British Machine Vision Conference, 2024

Understanding Transcriptional Regulatory Redundancy by Learnable Global Subset Perturbations.

Junhao Liu, Siwei Xu, Dylan Riffle, Ziheng Duan, Martin Renqiang Min, Jing Zhang

Proceedings of the Asian Conference on Machine Learning, 2024

2022

Expediting knowledge acquisition by a web framework for Knowledge Graph Exploration and Visualization (KGEV): case studies on COVID-19 and Human Phenotype Ontology.

Jacqueline Peng, David Xu, Ryan Lee, Siwei Xu, Yunyun Zhou, Kai Wang

BMC Medical Informatics Decis. Mak., 2022

Translator: A <i>Trans</i>fer <i>L</i>earning Approach to Facilitate Single-Cell <i>AT</i>AC-Seq Data Analysis fr<i>o</i>m <i>R</i>eference Dataset.

Siwei Xu, Mario Skarica, Ahyeon Hwang, Yi Dai, Cheyu Lee, Matthew J. Girgenti, Jing Zhang

J. Comput. Biol., 2022

Integrating longitudinal clinical and microbiome data to predict growth faltering in preterm infants.

Jose Lugo-Martinez, Siwei Xu, Justine Levesque, Daniel Gallagher, Leslie A. Parker, Josef Neu, Christopher J. Stewart, Janet E. Berrington, Nicholas D. Embleton, Gregory Young, Katherine E. Gregory, Misty Good, Arti Tandon, David Genetti, Tracy Warren, Ziv Bar-Joseph

J. Biomed. Informatics, 2022