Sündüz Keles

According to our database1, Sündüz Keles authored at least 21 papers between 2002 and 2019.

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Bibliography

2019
atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding.
Bioinform., 2019

2018
atSNPInfrastructure, a Case Study for Searching Billions of Records While Providing Significant Cost Savings over Cloud Providers.
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium Workshops, 2018

2017
A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets.
J. Comput. Biol., 2017

GLANET: genomic loci annotation and enrichment tool.
Bioinform., 2017

2016
Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection.
BMC Bioinform., 2016

2015
Perm-seq: Mapping Protein-DNA Interactions in Segmental Duplication and Highly Repetitive Regions of Genomes with Prior-Enhanced Read Mapping.
PLoS Computational Biology, 2015

atSNP: transcription factor binding affinity testing for regulatory SNP detection.
Bioinform., 2015

2014
A statistical framework for power calculations in ChIP-seq experiments.
Bioinform., 2014

CNV-guided multi-read allocation for ChIP-seq.
Bioinform., 2014

2013
dPeak: High Resolution Identification of Transcription Factor Binding Sites from PET and SET ChIP-Seq Data.
PLoS Computational Biology, 2013

2012
Normalization of ChIP-seq data with control.
BMC Bioinform., 2012

Detecting differential binding of transcription factors with ChIP-seq.
Bioinform., 2012

2011
Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data.
PLoS Computational Biology, 2011

eQTL Mapping for Functional Classes of Saccharomyces cerevisiae Genes with Multivariate Sparse Partial Least Squares Regression.
Proceedings of the Handbook of Statistical Bioinformatics., 2011

2009
Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming.
Proceedings of the Twelfth International Conference on Artificial Intelligence and Statistics, 2009

2008
CMARRT: A Tool of Analysis of CHIP-chip Data from Tiling Arrays by Incorporating the Correlation Structure.
Proceedings of the Biocomputing 2008, 2008

2006
Multiple Testing Methods For ChIP - Chip High Density Oligonucleotide Array Data.
J. Comput. Biol., 2006

2004
Regulatory motif finding by logic regression.
Bioinform., 2004

2003
Loss-based estimation with cross-validation: applications to microarray data analysis.
SIGKDD Explorations, 2003

Estimation of the Bivariate Survival Function with Generalized Bivariate Right Censored Data Structures.
Proceedings of the Advances in Survival Analysis, 2003

2002
Identification of regulatory elements using a feature selection method.
Bioinform., 2002


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