Thomas Girke

According to our database, Thomas Girke authored at least 13 papers between 2008 and 2016.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2016

bioassayR: Cross-Target Analysis of Small Molecule Bioactivity.

Tyler W. H. Backman, Thomas Girke

J. Chem. Inf. Model., 2016

systemPipeR: NGS workflow and report generation environment.

Tyler W. H. Backman, Thomas Girke

BMC Bioinform., 2016

2014

AlignGraph: algorithm for secondary <i>de novo</i> genome assembly guided by closely related references.

Ergude Bao, Tao Jiang, Thomas Girke

Bioinform., 2014

2013

Differential gene expression analysis using coexpression and RNA-Seq data.

Ei-Wen Yang, Thomas Girke, Tao Jiang

Bioinform., 2013

fmcsR: mismatch tolerant maximum common substructure searching in R.

Yan Wang, Tyler W. H. Backman, Kevin Horan, Thomas Girke

Bioinform., 2013

BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences.

Ergude Bao, Tao Jiang, Thomas Girke

Bioinform., 2013

2011

ChemMine tools: an online service for analyzing and clustering small molecules.

Tyler W. H. Backman, Yiqun Cao, Thomas Girke

Nucleic Acids Res., 2011

SEED: efficient clustering of next-generation sequences.

Ergude Bao, Tao Jiang, Isgouhi Kaloshian, Thomas Girke

Bioinform., 2011

2010

Predicting conserved protein motifs with Sub-HMMs.

Kevin Horan, Christian R. Shelton, Thomas Girke

BMC Bioinform., 2010

Single feature polymorphism detection using recombinant inbred line microarray expression data.

Xinping Cui, Na You, Thomas Girke, Richard Michelmore, Allen Van Deynze

Bioinform., 2010

Accelerated similarity searching and clustering of large compound sets by geometric embedding and locality sensitive hashing.

Yiqun Cao, Tao Jiang, Thomas Girke

Bioinform., 2010

2008

ChemmineR: a compound mining framework for R.

Yiqun Cao, Anna Charisi, Li-Chang Cheng, Tao Jiang, Thomas Girke

Bioinform., 2008

A maximum common substructure-based algorithm for searching and predicting drug-like compounds.

Yiqun Cao, Tao Jiang, Thomas Girke

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008