Umberto Lupo

According to our database, Umberto Lupo authored at least 9 papers between 2021 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

DiffPaSS - high-performance differentiable pairing of protein sequences using soft scores.

Umberto Lupo, Damiano Sgarbossa, Martina Milighetti, Anne-Florence Bitbol

Bioinform., 2025

2023

Pairing interacting protein sequences using masked language modeling.

Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol

CoRR, 2023

2022

Persistence Steenrod modules.

Umberto Lupo, Anibal M. Medina-Mardones, Guillaume Tauzin

J. Appl. Comput. Topol., 2022

ICLR 2022 Challenge for Computational Geometry and Topology: Design and Results.

Adele Myers, Saiteja Utpala, Shubham Talbar, Sophia Sanborn, Christian Shewmake, Claire Donnat, Johan Mathe, Umberto Lupo, Rishi Sonthalia, Xinyue Cui, Tom Szwagier, Arthur Pignet, Andri Bergsson, Søren Hauberg, Dmitriy Nielsen, Stefan Sommer, David A. Klindt, Erik Hermansen, Melvin Vaupel, Benjamin A. Dunn, Jeffrey Xiong, Noga Aharony, Itsik Pe'er, Felix Ambellan, Martin Hanik, Esfandiar Nava-Yazdani, Christoph von Tycowicz, Nina Miolane

CoRR, 2022

Generative power of a protein language model trained on multiple sequence alignments.

Damiano Sgarbossa, Umberto Lupo, Anne-Florence Bitbol

CoRR, 2022

Protein language models trained on multiple sequence alignments learn phylogenetic relationships.

Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol

CoRR, 2022

2021

giotto-tda: : A Topological Data Analysis Toolkit for Machine Learning and Data Exploration.

Guillaume Tauzin, Umberto Lupo, Lewis Tunstall, Julian Burella Pérez, Matteo Caorsi, Anibal M. Medina-Mardones, Alberto Dassatti, Kathryn Hess

J. Mach. Learn. Res., 2021

ICLR 2021 Challenge for Computational Geometry & Topology: Design and Results.

Nina Miolane, Matteo Caorsi, Umberto Lupo, Marius Guerard, Nicolas Guigui, Johan Mathe, Yann Cabanes, Wojciech Reise, Thomas Davies, António Leitão, Somesh Mohapatra, Saiteja Utpala, Shailja Shailja, Gabriele Corso, Guoxi Liu, Federico Iuricich, Andrei Manolache, Mihaela Nistor, Matei Bejan, Armand Mihai Nicolicioiu, Bogdan-Alexandru Luchian, Mihai-Sorin Stupariu, Florent Michel, Khanh Dao Duc, Bilal Abdulrahman, Maxim Beketov, Elodie Maignant, Zhiyuan Liu, Marek Cerný, Martin Bauw, Santiago Velasco-Forero, Jesús Angulo, Yanan Long

CoRR, 2021

Giotto-ph: A Python Library for High-Performance Computation of Persistent Homology of Vietoris-Rips Filtrations.

Julian Burella Pérez, Sydney Hauke, Umberto Lupo, Matteo Caorsi, Alberto Dassatti

CoRR, 2021