Vytas K. Svedas

According to our database, Vytas K. Svedas authored at least 14 papers between 2014 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

Guide tree optimization with genetic algorithm to improve multiple protein 3D-structure alignment.

Maksim V. Shegay, Vytas K. Svedas, Vladimir V. Voevodin, Dmitry A. Suplatov, Nina N. Popova

Bioinform., 2022

2021

Co-designing HPC-systems by computing capabilities and management flexibility to accommodate bioinformatic workflows at different complexity levels.

Dmitry A. Suplatov, Maksim V. Shegay, Yana A. Sharapova, Ivan V. Timokhin, Nina Popova, Vladimir V. Voevodin, Vytas K. Svedas

J. Supercomput., 2021

PLUMED Plugin Integration into High Performance Pmemd Program for Enhanced Molecular Dynamics Simulations.

Viktor V. Drobot, Evgeny M. Kirilin, Kirill E. Kopylov, Vytas K. Svedas

Supercomput. Front. Innov., 2021

2020

Zebra2: advanced and easy-to-use web-server for bioinformatic analysis of subfamily-specific and conserved positions in diverse protein superfamilies.

Dmitry A. Suplatov, Yana A. Sharapova, Elizaveta Geraseva, Vytas K. Svedas

Nucleic Acids Res., 2020

vsFilt: A Tool to Improve Virtual Screening by Structural Filtration of Docking Poses.

Irina V. Gushchina, Aleksandra M. Polenova, Dmitry A. Suplatov, Vytas K. Svedas, Dmitry K. Nilov

J. Chem. Inf. Model., 2020

EasyAmber: A comprehensive toolbox to automate the molecular dynamics simulation of proteins.

Dmitry A. Suplatov, Yana A. Sharapova, Vytas K. Svedas

J. Bioinform. Comput. Biol., 2020

2019

Yosshi: a web-server for disulfide engineering by bioinformatic analysis of diverse protein families.

Dmitry A. Suplatov, Daria Timonina, Yana A. Sharapova, Vytas K. Svedas

Nucleic Acids Res., 2019

parMATT: parallel multiple alignment of protein 3D-structures with translations and twists for distributed-memory systems.

Maksim V. Shegay, Dmitry A. Suplatov, Nina N. Popova, Vytas K. Svedas, Vladimir V. Voevodin

Bioinform., 2019

High-Performance Hybrid Computing for Bioinformatic Analysis of Protein Superfamilies.

Dmitry A. Suplatov, Yana A. Sharapova, Maksim V. Shegay, Nina N. Popova, Kateryna Fesko, Vladimir V. Voevodin, Vytas K. Svedas

Proceedings of the Supercomputing, 2019

2018

Simulating the Long-timescale Structural Behavior of Bacterial and Influenza Neuraminidases with Different HPC Resources.

Yana A. Sharapova, Dmitry A. Suplatov, Vytas K. Svedas

Supercomput. Front. Innov., 2018

The visualCMAT: A web-server to select and interpret correlated mutations/co-evolving residues in protein families.

Dmitry A. Suplatov, Yana A. Sharapova, Daria Timonina, Kirill E. Kopylov, Vytas K. Svedas

J. Bioinform. Comput. Biol., 2018

Mustguseal: a server for multiple structure-guided sequence alignment of protein families.

Dmitry A. Suplatov, Kirill E. Kopylov, Nina N. Popova, Vladimir V. Voevodin, Vytas K. Svedas

Bioinform., 2018

2016

Parallel workflow manager for non-parallel bioinformatic applications to solve large-scale biological problems on a supercomputer.

Dmitry A. Suplatov, Nina Popova, Sergey A. Zhumatiy, Vladimir V. Voevodin, Vytas K. Svedas

J. Bioinform. Comput. Biol., 2016

2014

pocketZebra: a web-server for automated selection and classification of subfamily-specific binding sites by bioinformatic analysis of diverse protein families.

Dmitry A. Suplatov, Eugeny M. Kirilin, Mikhail Arbatsky, Vakil Takhaveev, Vytas K. Svedas

Nucleic Acids Res., 2014