Wei Zheng

Orcid: 0000-0002-2984-9003

Affiliations:
  • University of Michigan, Department of Computational Medicine and Bioinformatics, Ann Arbor, MI, USA
  • Nankai University, School of Mathematical Sciences and LPMC, Tianjin, China (former)


According to our database1, Wei Zheng authored at least 20 papers between 2014 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of five.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2024
DEMO-EM2: assembling protein complex structures from cryo-EM maps through intertwined chain and domain fitting.
Briefings Bioinform., 2024

2023
DMFold models for 5,042 human proteins.
Dataset, November, 2023

DeepMSA2 standalone package.
Dataset, November, 2023

DMFold standalone package.
Dataset, November, 2023

2022
Progressive assembly of multi-domain protein structures from cryo-EM density maps.
Nat. Comput. Sci., 2022

DEMO2: Assemble multi-domain protein structures by coupling analogous template alignments with deep-learning inter-domain restraint prediction.
Nucleic Acids Res., 2022

LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation.
Nucleic Acids Res., 2022

2021
Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders.
PLoS Comput. Biol., 2021

Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks.
PLoS Comput. Biol., 2021

2020
FUpred: detecting protein domains through deep-learning-based contact map prediction.
Bioinform., 2020

DeepMSA: constructing deep multiple sequence alignment to improve contact prediction and fold-recognition for distant-homology proteins.
Bioinform., 2020

SSIPe: accurately estimating protein-protein binding affinity change upon mutations using evolutionary profiles in combination with an optimized physical energy function.
Bioinform., 2020

2019
Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
PLoS Comput. Biol., 2019

LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins.
Nucleic Acids Res., 2019

I-TASSER gateway: A protein structure and function prediction server powered by XSEDE.
Future Gener. Comput. Syst., 2019

2018
A large-scale comparative assessment of methods for residue-residue contact prediction.
Briefings Bioinform., 2018

2017
PrAS: Prediction of amidation sites using multiple feature extraction.
Comput. Biol. Chem., 2017

2014
Quad-PRE: A Hybrid Method to Predict Protein Quaternary Structure Attributes.
Comput. Math. Methods Medicine, 2014

An ensemble method for prediction of conformational B-cell epitopes from antigen sequences.
Comput. Biol. Chem., 2014

newDNA-Prot: Prediction of DNA-binding proteins by employing support vector machine and a comprehensive sequence representation.
Comput. Biol. Chem., 2014


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