Zhen-Ling Peng

According to our database, Zhen-Ling Peng authored at least 27 papers between 2010 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Protein language models for structural biology.

Chenxiao Xiang, Bin Cheng, Zhenling Peng, Jianyi Yang

Nat. Comput. Sci., May, 2026

2025

Rapid and Accurate Protein Structure Database Search Using Inverse Folding Model and Contrastive Learning.

Qiuyi Lyu, Hong Wei, Shuaishuai Chen, Zhenling Peng, Jianyi Yang

J. Chem. Inf. Model., 2025

2024

RNA threading with secondary structure and sequence profile.

Zongyang Du, Zhenling Peng, Jianyi Yang

Bioinform., February, 2024

Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein-ligand Interactions.

Hong Wei, Wenkai Wang, Zhenling Peng, Jianyi Yang

Genom. Proteom. Bioinform., 2024

2023

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins.

Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan

Nucleic Acids Res., July, 2023

A unified approach to protein domain parsing with inter-residue distance matrix.

Kun Zhu, Hong Su, Zhenling Peng, Jianyi Yang

Bioinform., February, 2023

CLIP: accurate prediction of disordered linear interacting peptides from protein sequences using co-evolutionary information.

Zhenling Peng, Zixia Li, Qiaozhen Meng, Bi Zhao, Lukasz A. Kurgan

Briefings Bioinform., January, 2023

2022

On Monomeric and Multimeric Structures-Based Protein-Ligand Interactions.

Yajun Dai, Yang Li, Liping Wang, Zhenling Peng, Jianyi Yang

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Single-sequence protein structure prediction using supervised transformer protein language models.

Wenkai Wang, Zhenling Peng, Jianyi Yang

Nat. Comput. Sci., 2022

Toward the assessment of predicted inter-residue distance.

Zongyang Du, Zhenling Peng, Jianyi Yang

Bioinform., 2022

2021

Improved estimation of model quality using predicted inter-residue distance.

Lisha Ye, Peikun Wu, Zhenling Peng, Jianzhao Gao, Jian Liu, Jianyi Yang

Bioinform., 2021

RNA inter-nucleotide 3D closeness prediction by deep residual neural networks.

Saisai Sun, Wenkai Wang, Zhenling Peng, Jianyi Yang

Bioinform., 2021

Recognition of small molecule-RNA binding sites using RNA sequence and structure.

Hong Su, Zhenling Peng, Jianyi Yang

Bioinform., 2021

2020

Protein contact prediction using metagenome sequence data and residual neural networks.

Qi Wu, Zhenling Peng, Ivan Anishchenko, Qian Cong, David Baker, Jianyi Yang

Bioinform., 2020

CATHER: a novel threading algorithm with predicted contacts.

Zongyang Du, Shuo Pan, Qi Wu, Zhenling Peng, Jianyi Yang

Bioinform., 2020

2019

Enhanced prediction of RNA solvent accessibility with long short-term memory neural networks and improved sequence profiles.

Saisai Sun, Qi Wu, Zhenling Peng, Jianyi Yang

Bioinform., 2019

Improving the prediction of protein-nucleic acids binding residues via multiple sequence profiles and the consensus of complementary methods.

Hong Su, Mengchen Liu, Saisai Sun, Zhenling Peng, Jianyi Yang

Bioinform., 2019

2018

COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking.

Qi Wu, Zhenling Peng, Yang Zhang, Jianyi Yang

Nucleic Acids Res., 2018

mTM-align: a server for fast protein structure database search and multiple protein structure alignment.

Runze Dong, Shuo Pan, Zhenling Peng, Yang Zhang, Jianyi Yang

Nucleic Acids Res., 2018

Improving Sequence-Based Prediction of Protein-Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method.

Zijuan Zhao, Zhenling Peng, Jianyi Yang

J. Chem. Inf. Model., 2018

CoABind: a novel algorithm for Coenzyme A (CoA)- and CoA derivatives-binding residues prediction.

Qiaozhen Meng, Zhenling Peng, Jianyi Yang

Bioinform., 2018

mTM-align: an algorithm for fast and accurate multiple protein structure alignment.

Runze Dong, Zhenling Peng, Yang Zhang, Jianyi Yang

Bioinform., 2018

A large-scale comparative assessment of methods for residue-residue contact prediction.

Qiqige Wuyun, Wei Zheng, Zhenling Peng, Jianyi Yang

Briefings Bioinform., 2018

2017

An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier.

Jiaqi Xia, Zhenling Peng, Dawei Qi, Hongbo Mu, Jianyi Yang

Bioinform., 2017

2012

On the Complementarity of the Consensus-Based Disorder Prediction.

Zhenling Peng, Lukasz A. Kurgan

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2010

Prediction of protein structural classes for low-homology sequences based on predicted secondary structure.

Jianyi Yang, Zhen-Ling Peng, Xin Chen

BMC Bioinform., 2010

An improved classification of G-protein-coupled receptors using sequence-derived features.

Zhen-Ling Peng, Jianyi Yang, Xin Chen

BMC Bioinform., 2010