Weidun Xie

According to our database, Weidun Xie authored at least 13 papers between 2021 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

When East Meets West: Cross-Domain Drug Interaction Annotations With Large Language Models and Bidirectional Neural Networks.

Ruoxuan Zhang, Weidun Xie, Qiuzhen Lin, Xiangtao Li, Ka-Chun Wong

IEEE J. Biomed. Health Informatics, December, 2025

Directed Link Prediction Using GNN With Local and Global Feature Fusion.

Yuyang Zhang, Xu Shen, Yu Xie, Ka-Chun Wong, Weidun Xie, Chengbin Peng

IEEE Trans. Netw. Sci. Eng., 2025

cis-positional information in regulatory single nucleotide variation prioritization.

Ka-Chun Wong, Zhongyu Yao, Weidun Xie, Zhongshen Li, Tianchi Lu, Cho Ling

Briefings Bioinform., 2025

DDintensity: Addressing imbalanced drug-drug interaction risk levels using pre-trained deep learning model embeddings.

Weidun Xie, Xingjian Chen, Lei Huang, Zetian Zheng, Yuchen Wang, Ruoxuan Zhang, Xiao Zhang, Zhichao Liu, Chengbin Peng, Monika Gullerova, Ka-Chun Wong

Artif. Intell. Medicine, 2025

2024

A Unified Conditional Diffusion Framework for Dual Protein Targets-Based Bioactive Molecule Generation.

Lei Huang, Zheng Yuan, Huihui Yan, Rong Sheng, Linjing Liu, Fuzhou Wang, Weidun Xie, Nanjun Chen, Fei Huang, Songfang Huang, Ka-Chun Wong, Yaoyun Zhang

IEEE Trans. Artif. Intell., September, 2024

DeepSeq2Drug: An expandable ensemble end-to-end anti-viral drug repurposing benchmark framework by multi-modal embeddings and transfer learning.

Weidun Xie, Jixiang Yu, Lei Huang, Lek Shyuen For, Zetian Zheng, Xingjian Chen, Yuchen Wang, Zhichao Liu, Chengbin Peng, Ka-Chun Wong

Comput. Biol. Medicine, 2024

HE2Gene: image-to-RNA translation via multi-task learning for spatial transcriptomics data.

Xingjian Chen, Jiecong Lin, Yuchen Wang, Weitong Zhang, Weidun Xie, Zetian Zheng, Ka-Chun Wong

Bioinform., 2024

scPER2P: Parameter-Efficient Single-Cell LLM for Translated Proteome Profiles.

Yuchen Wang, Xingjian Chen, Zetian Zheng, Weidun Xie, Fuzhou Wang, Lei Huang, Ka-Chun Wong

Proceedings of the Neural Information Processing - 31st International Conference, 2024

2023

DiffDTM: A conditional structure-free framework for bioactive molecules generation targeted for dual proteins.

Lei Huang, Zheng Yuan, Huihui Yan, Rong Sheng, Linjing Liu, Fuzhou Wang, Weidun Xie, Nanjun Chen, Fei Huang, Songfang Huang, Ka-Chun Wong, Yaoyun Zhang

CoRR, 2023

2022

Subclass-Specific Prognosis and Treatment Efficacy Inference in Head and Neck Squamous Carcinoma.

Zetian Zheng, Weidun Xie, Xingjian Chen, Fuzhou Wang, Lei Huang, Xiangtao Li, Qiuzhen Lin, Ka-Chun Wong

IEEE J. Biomed. Health Informatics, 2022

SRG-Vote: Predicting Mirna-Gene Relationships via Embedding and LSTM Ensemble.

Weidun Xie, Zetian Zheng, Weitong Zhang, Lei Huang, Qiuzhen Lin, Ka-Chun Wong

IEEE J. Biomed. Health Informatics, 2022

2021

SG-LSTM-FRAME: a computational frame using sequence and geometrical information via LSTM to predict miRNA-gene associations.

Weidun Xie, Jiawei Luo, Chu Pan, Ying Liu

Briefings Bioinform., 2021

Metric Learning Based Vision Transformer for Product Matching.

Lei Huang, Wei Shao, Fuzhou Wang, Weidun Xie, Ka-Chun Wong

Proceedings of the Neural Information Processing - 28th International Conference, 2021