Xiaohua Hu

According to our database1, Xiaohua Hu authored at least 331 papers between 1993 and 2019.

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Bibliography

2019
Inferring Gene Network Rewiring by Combining Gene Expression and Gene Mutation Data.
IEEE/ACM Trans. Comput. Biology Bioinform., 2019

Large-Scale Joint Topic, Sentiment & User Preference Analysis for Online Reviews.
CoRR, 2019

DiffNetFDR: differential network analysis with false discovery rate control.
Bioinformatics, 2019

2018
Identifying Gene Network Rewiring by Integrating Gene Expression and Gene Network Data.
IEEE/ACM Trans. Comput. Biology Bioinform., 2018

Correlated Anomaly Detection from Large Streaming Data.
CoRR, 2018

Fast Botnet Detection From Streaming Logs Using Online Lanczos Method.
CoRR, 2018

Unifying Topic, Sentiment & Preference in an HDP-Based Rating Regression Model for Online Reviews.
CoRR, 2018

Nonlinear expression and visualization of nonmetric relationships in genetic diseases and microbiome data.
BMC Bioinformatics, 2018

ConnectedAlign: a PPI network alignment method for identifying conserved protein complexes across multiple species.
BMC Bioinformatics, 2018

DiffGraph: an R package for identifying gene network rewiring using differential graphical models.
Bioinformatics, 2018

BANN: A Framework for Aspect-Level Opinion Mining.
Proceedings of the 6th International Conference on Information Technology: IoT and Smart City, 2018

A Novel Approach Based on Bi-Random Walk to Predict Microbe-Disease Associations.
Proceedings of the Intelligent Computing Methodologies - 14th International Conference, 2018

ESNMF: Evolutionary Symmetric Nonnegative Matrix Factorization for Dissecting Dynamic Microbial Networks.
Proceedings of the Intelligent Computing Methodologies - 14th International Conference, 2018

Predicting Microbe-Disease Association by Kernelized Bayesian Matrix Factorization.
Proceedings of the Intelligent Computing Theories and Application, 2018

Comparative Study of CNN and LSTM based Attention Neural Networks for Aspect-Level Opinion Mining.
Proceedings of the IEEE International Conference on Big Data, 2018

Correlated Anomaly Detection from Large Streaming Data.
Proceedings of the IEEE International Conference on Big Data, 2018

The Phylogenetic Tree based Deep Forest for Metagenomic Data Classification.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

An Ensemble Feature Selection Method Based on Deep Forest for Microbiome-Wide Association Studies.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Inference of protein-protein networks for triple-negative breast cancer using single-patient proteomic data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Automatic Liver Segmentation Using Multi-plane Integrated Fully Convolutional Neural Networks.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Aligning Multiple PPI Networks with Representation Learning on Networks.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

High-order Organization of Weighted Microbial Interaction Network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Prediction of Long Non-coding RNA-protein Interaction through Kernel Soft-neighborhood Similarity.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Kernel Soft-neighborhood Network Fusion for MiRNA-Disease Interaction Prediction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Virus-host Association Prediction by using Kernelized Logistic Matrix Factorization on Heterogeneous Networks.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A Hybrid Deep Learning Framework for Bacterial Named Entity Recognition.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
Multi-View Clustering of Microbiome Samples by Robust Similarity Network Fusion and Spectral Clustering.
IEEE/ACM Trans. Comput. Biology Bioinform., 2017

Microbiome Data Representation by Joint Nonnegative Matrix Factorization with Laplacian Regularization.
IEEE/ACM Trans. Comput. Biology Bioinform., 2017

Product review summarization through question retrieval and diversification.
Inf. Retr. Journal, 2017

Which used product is more sellable? A time-aware approach.
Inf. Retr. Journal, 2017

Identifying the Risky SNP of Osteoporosis with ID3-PEP Decision Tree Algorithm.
Complexity, 2017

Prediction of essential proteins based on subcellular localization and gene expression correlation.
BMC Bioinformatics, 2017

Counter Deanonymization Query: H-index Based k-Anonymization Privacy Protection for Social Networks.
Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2017

LKT-FM: A Novel Rating Pattern Transfer Model for Improving Non-overlapping Cross-Domain Collaborative Filtering.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2017

Integrating extra knowledge into word embedding models for biomedical NLP tasks.
Proceedings of the 2017 International Joint Conference on Neural Networks, 2017

Community-Based Network Alignment for Large Attributed Network.
Proceedings of the 2017 ACM on Conference on Information and Knowledge Management, 2017

Heterogeneous knowledge transfer via domain regularization for improving cross-domain collaborative filtering.
Proceedings of the 2017 IEEE International Conference on Big Data, BigData 2017, 2017

Large-scale joint topic, sentiment & user preference analysis for online reviews.
Proceedings of the 2017 IEEE International Conference on Big Data, BigData 2017, 2017

Visualization of non-metric relationships by adaptive learning multiple maps t-SNE regularization.
Proceedings of the 2017 IEEE International Conference on Big Data, BigData 2017, 2017

Fast botnet detection from streaming logs using online lanczos method.
Proceedings of the 2017 IEEE International Conference on Big Data, BigData 2017, 2017

HIV1-human protein-protein interaction prediction based on interface architecture similarity.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Classify and identify the risky loci of type 2 diabetes with computational method.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Systematic characterization and prediction of tumor-associated genes in mouse using microrna.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Bacterial named entity recognition based on dictionary and conditional random field.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Visualization of disease relationships by multiple maps t-SNE regularization based on Nesterov accelerated gradient.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

The modularity of microbial interaction network in healthy human saliva: Stability and specificity.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Preliminary exploratory data analysis of simulated national clinical data research network for future use in annotation of a rare tumor biobanking initiative.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
Learning the Multilingual Translation Representations for Question Retrieval in Community Question Answering via Non-Negative Matrix Factorization.
IEEE/ACM Trans. Audio, Speech & Language Processing, 2016

Cross-lingual sentiment classification with stacked autoencoders.
Knowl. Inf. Syst., 2016

A novel proteins complex identification based on connected affinity and multi-level seed extension.
IJDMB, 2016

Dialogue Session Segmentation by Embedding-Enhanced TextTiling.
CoRR, 2016

Identification of the clustering structure in microbiome data by density clustering on the Manhattan distance.
SCIENCE CHINA Information Sciences, 2016

contamDE: differential expression analysis of RNA-seq data for contaminated tumor samples.
Bioinformatics, 2016

Socialized Language Model Smoothing via Bi-directional Influence Propagation on Social Networks.
Proceedings of the 25th International Conference on World Wide Web, 2016

Retrieving Non-Redundant Questions to Summarize a Product Review.
Proceedings of the 39th International ACM SIGIR conference on Research and Development in Information Retrieval, 2016

Dialogue Session Segmentation by Embedding-Enhanced TextTiling.
Proceedings of the Interspeech 2016, 2016

Self-organizing binary encoding for Approximate Nearest Neighbor search.
Proceedings of the 24th European Signal Processing Conference, 2016

Semantic pattern mining for text mining.
Proceedings of the 2016 IEEE International Conference on Big Data, 2016

Pairwise topic model and its application to topic transition and evolution.
Proceedings of the 2016 IEEE International Conference on Big Data, 2016

Parallel top-k subgraph query in massive graphs: Computing from the perspective of single vertex.
Proceedings of the 2016 IEEE International Conference on Big Data, 2016

Semi-supervised Dirichlet-Hawkes process with applications of topic detection and tracking in Twitter.
Proceedings of the 2016 IEEE International Conference on Big Data, 2016

Walking in the PPI network to identify the risky SNP of osteoporosis with decision tree algorithm.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Inference of genetic regulatory network for stem cell using single cells expression data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Preface.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

A algorithm for identifying disease genes by incorporating the subcellular localization information into the protein-protein interaction networks.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Achieving high k-coverage and k-consistency in global alignment of multiple PPI networks.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

A novel identified temporal protein complexes strategy inspired by density-distance and brainstorming process.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Predicting disease-microbe association by random walking on the heterogeneous network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Multi-view clustering microbiome data by joint symmetric nonnegative matrix factorization with Laplacian regularization.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

A novel algorithm for identifying essential proteins by integrating subcellular localization.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Unifying Topic, Sentiment & Preference in an HDP-Based Rating Regression Model for Online Reviews.
Proceedings of The 8th Asian Conference on Machine Learning, 2016

Chinese Couplet Generation with Neural Network Structures.
Proceedings of the 54th Annual Meeting of the Association for Computational Linguistics, 2016

2015
Predicting Microbial Interactions Using Vector Autoregressive Model with Graph Regularization.
IEEE/ACM Trans. Comput. Biology Bioinform., 2015

Identifying susceptibility networks for drug-induced non-immune neutropenia.
IJDMB, 2015

Information Dissemination of Public Health Emergency on Social Networks and Intelligent Computation.
Comp. Int. and Neurosc., 2015

Tackling the Achilles Heel of Social Networks: Influence Propagation based Language Model Smoothing.
Proceedings of the 24th International Conference on World Wide Web, 2015

Learning Focused Hierarchical Topic Models with Semi-Supervision in Microblogs.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2015

ProbitUCB: A Novel Method for Review Ranking.
Proceedings of the Trends and Applications in Knowledge Discovery and Data Mining, 2015

Linking Heterogeneous Input Features with Pivots for Domain Adaptation.
Proceedings of the Twenty-Fourth International Joint Conference on Artificial Intelligence, 2015

Opportunities or Risks to Reduce Labor in Crowdsourcing Translation? Characterizing Cost versus Quality via a PageRank-HITS Hybrid Model.
Proceedings of the Twenty-Fourth International Joint Conference on Artificial Intelligence, 2015

Video Popularity Prediction by Sentiment Propagation via Implicit Network.
Proceedings of the 24th ACM International Conference on Information and Knowledge Management, 2015

Predicting microbial interactions by using network-constrained regularization incorporating covariate coefficients and connection signs.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Time series analysis of microbiome data regularized by local linear manifold.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

A novel dimensionality reduction algorithm based on Laplace matrix for microbiome data analysis.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Tackling Sparsity, the Achilles Heel of Social Networks: Language Model Smoothing via Social Regularization.
Proceedings of the 53rd Annual Meeting of the Association for Computational Linguistics and the 7th International Joint Conference on Natural Language Processing of the Asian Federation of Natural Language Processing, 2015

2014
AOBA: Recognizing Object Behavior in Pervasive Urban Management.
IEEE Trans. Knowl. Data Eng., 2014

An efficient protein complex mining algorithm based on Multistage Kernel Extension.
BMC Bioinformatics, 2014

Drexel at TREC 2014 Federated Web Search Track.
Proceedings of The Twenty-Third Text REtrieval Conference, 2014

Document Clustering with an Augmented Nonnegative Matrix Factorization Model.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2014

Hash-Based Stream LDA: Topic Modeling in Social Streams.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2014

Joint Analysis of Functional and Phylogenetic Composition for Human Microbiome Data.
Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014

Language Model Document Priors based on Citation and Co-citation Analysis.
Proceedings of the First Workshop on Bibliometric-enhanced Information Retrieval co-located with 36th European Conference on Information Retrieval (ECIR 2014), 2014

A Two-level Approach for Subtitle Alignment.
Proceedings of the Advances in Information Retrieval, 2014

Identifying top Chinese network buzzwords from social media big data set based on time-distribution features.
Proceedings of the 2014 IEEE International Conference on Big Data, 2014

Pairwise Topic Model via relation extraction.
Proceedings of the 2014 IEEE International Conference on Big Data, 2014

A novel disease gene prediction method based on PPI network.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Automatically recommending healthy living programs to patients with chronic diseases through hybrid content-based and collaborative filtering.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Data integration and supervised learning based protein complex detection method.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

LA2SNE: A novel stochastic neighbor embedding approach for microbiome data visualization.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Microbiome dynamics analysis using a novel multivariate vector autoregression model with weighted fusion regularization.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Accelerating microbiomic big data analysis by spectral interpolation.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Relation extraction from biomedical literature with minimal supervision and grouping strategy.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

A matching framework for modeling symptom and medication relationships from clinical notes.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Microbiome data integration by robust similarity network fusion.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

A novel proteins complex identification based on connected affinity and multi-level seed extension.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Prioritizing disease-causing genes based on network diffusion and rank concordance.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
Fuzzy Reasoning of Accident Provenance in Pervasive Healthcare Monitoring Systems.
IEEE J. Biomedical and Health Informatics, 2013

A Novel Hybrid HDP-LDA Model for Sentiment Analysis.
Proceedings of the 2013 IEEE/WIC/ACM International Conferences on Web Intelligence, 2013

Identifying Authoritative and Reliable Contents in Community Question Answering with Domain Knowledge.
Proceedings of the Trends and Applications in Knowledge Discovery and Data Mining, 2013

Information passing in online recommendation.
Proceedings of the 1st workshop on User engagement optimization, 2013

Tree Labeled LDA: A Hierarchical model for web summaries.
Proceedings of the 2013 IEEE International Conference on Big Data, 2013

A novel protein complex identification algorithm based on gene co-expression (PCIA-GeCo).
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

An integrated approach to identify protein complex based on best neighbor and modularity increment.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Protein functional module detection based on closely associated degree.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Enhancing entity annotation using web service and ontology hierarchy in biomedical domains.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

An evaluation of identification of suspected autism spectrum disorder (ASD) cases in early intervention (EI) records.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

An error detecting and tagging framework for reducing data entry errors in electronic medical records (EMR) system.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Mining protein complexes based on connected affinity clique extension.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Manifold-constrained regularization for variable selection in envrionmental microbiomic data.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Inference of microbial interactions from time series data using vector autoregression model.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
ProteinNET: A Protein Interaction Network Integration System.
Proceedings of the Modern Advances in Intelligent Systems and Tools, 2012

Utilizing Different Link Types to Enhance Document Clustering Based on Markov Random Field Model With Relaxation Labeling.
IEEE Trans. Systems, Man, and Cybernetics, Part A, 2012

Exploiting the Functional and Taxonomic Structure of Genomic Data by Probabilistic Topic Modeling.
IEEE/ACM Trans. Comput. Biology Bioinform., 2012

Tourism Crisis Management System Based on Ecological Mechanism.
JSW, 2012

Analysis of Browsing Behaviors with Ant Colony Clustering Algorithm.
JCP, 2012

Modeling and mining term association for improving biomedical information retrieval performance.
BMC Bioinformatics, 2012

Exploiting semantic structure for mapping user-specified form terms to SNOMED CT concepts.
Proceedings of the ACM International Health Informatics Symposium, 2012

Data exploration and knowledge discovery in a patient wellness tracking (PWT) system at a nurse-managed health services center.
Proceedings of the ACM International Health Informatics Symposium, 2012

Representation and deduction of provenance knowledge for XML queries.
Proceedings of the 2012 IEEE International Conference on Granular Computing, 2012

Author-conference topic-connection model for academic network search.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012

Incorporating word correlation into tag-topic model for semantic knowledge acquisition.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012

Modeling semantic relations between visual attributes and object categories via dirichlet forest prior.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012

Learning to discover complex mappings from web forms to ontologies.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012

A Bayesian-based prediction model for personalized medical health care.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Manifold learning reveals nonlinear structure in metagenomic profiles.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Identifying enterotype in human microbiome by decomposing probabilistic topics into components.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Bridging encounter forms and electronic medical record databases: Annotation, mapping, and integration.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2011
Exploiting the Social Tagging Network for Web Clustering.
IEEE Trans. Systems, Man, and Cybernetics, Part A, 2011

A Framework for Semisupervised Feature Generation and Its Applications in Biomedical Literature Mining.
IEEE/ACM Trans. Comput. Biology Bioinform., 2011

Weak Ratio Rules: A Generalized Boolean Association Rules.
IJDWM, 2011

A Systems Biology Approach for Detecting Toxicity-Related Hotspots inside protein Interaction Networks.
J. Bioinformatics and Computational Biology, 2011

Generalisation of rough set for rule induction in incomplete system.
IJGCRSIS, 2011

MAPLSC: A novel multi-class classifier for medical diagnosis.
IJDMB, 2011

Maximizing influence spread in modular social networks by optimal resource allocation.
Expert Syst. Appl., 2011

Promoting ranking diversity for genomics search with relevance-novelty combined model.
BMC Bioinformatics, 2011

Exploring matrix factorization techniques for significant genes identification of Alzheimer's disease microarray gene expression data.
BMC Bioinformatics, 2011

Active Learning of Model Parameters for Influence Maximization.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2011

Post-based collaborative filtering for personalized tag recommendation.
Proceedings of the iConference 2011, 2011

A Systems Biology Approach for Detecting Toxicity-Related Hotspots inside Protein Interaction Networks.
Proceedings of the 2011 IEEE International Conference on Healthcare Informatics, 2011

Automatic approaches to clustering occupational description data for prediction of probability of workplace exposure to beryllium.
Proceedings of the 2011 IEEE International Conference on Granular Computing, 2011

Online MOACO biclustering of microarray data.
Proceedings of the 2011 IEEE International Conference on Granular Computing, 2011

A comparison study on familiarity-based and similarity-based social networks.
Proceedings of the 2011 IEEE International Conference on Granular Computing, 2011

Data mining and its applications in bioinformatics: Techniques and methods.
Proceedings of the 2011 IEEE International Conference on Granular Computing, 2011

Content prediction of Chlorophyll-a in seawater based on Fuzzy BP method.
Proceedings of the Eighth International Conference on Fuzzy Systems and Knowledge Discovery, 2011

Automatically Mapping and Integrating Multiple Data Entry Forms into a Database.
Proceedings of the Conceptual Modeling - ER 2011, 30th International Conference, 2011

Perspective hierarchical dirichlet process for user-tagged image modeling.
Proceedings of the 20th ACM Conference on Information and Knowledge Management, 2011

Multiobjective optizition shuffled frog-leaping biclustering.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

A Term Association Approach for Genomics Information Retrieval.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

Mining Protein Interactions and Gene Expression Data to Gain Insights into Drug-induced Toxicity Mechanisms.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

Promoting Ranking Diversity for Biomedical Information Retrieval Based on LDA.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

Inferring Functional Groups from Microbial Gene Catalogue with Probabilistic Topic Models.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

A Dynamic and Semantically-Aware Technique for Document Clustering in Biomedical Literature.
Proceedings of the Integrations of Data Warehousing, Data Mining and Database Technologies, 2011

2010
A path-traceable query routing mechanism for search in unstructured peer-to-peer networks.
J. Network and Computer Applications, 2010

User tags versus expert-assigned subject terms: A comparison of LibraryThing tags and Library of Congress Subject Headings.
J. Inf. Sci., 2010

Maintaining Mappings between Conceptual Models and Relational Schemas.
J. Database Manag., 2010

Mining hidden connections among biomedical concepts from disjoint biomedical literature sets through semantic-based association rule.
Int. J. Intell. Syst., 2010

MOACO Biclustering of gene expression data.
I. J. Functional Informatics and Personalised Medicine, 2010

Exploratory analysis of protein translation regulatory networks using hierarchical random graphs.
BMC Bioinformatics, 2010

Learning an enriched representation from unlabeled data for protein-protein interaction extraction.
BMC Bioinformatics, 2010

Improving Diversity of Focused Summaries through the Negative Endorsements of Redundant Facts.
Proceedings of the 2010 IEEE/WIC/ACM International Conference on Web Intelligence, 2010

OASNET: an optimal allocation approach to influence maximization in modular social networks.
Proceedings of the 2010 ACM Symposium on Applied Computing (SAC), 2010

Answer Diversification for Complex Question Answering on the Web.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2010

The topic-perspective model for social tagging systems.
Proceedings of the 16th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2010

Can clinicians create high-quality databases: a study on a flexible electronic health record (fEHR) system.
Proceedings of the ACM International Health Informatics Symposium, 2010

Metadata Effectiveness: A Comparison between User-Created Social Tags and Author-Provided Metadata.
Proceedings of the 43rd Hawaii International International Conference on Systems Science (HICSS-43 2010), 2010

A probabilistic topic-connection model for automatic image annotation.
Proceedings of the 19th ACM Conference on Information and Knowledge Management, 2010

A relevance-novelty combined model for genomics search result diversification.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Exploring matrix factorization techniques for significant genes identification of microarray dataset.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Probabilistic topic modeling for genomic data interpretation.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Hierarchical Classification with Dynamic-Threshold SVM Ensemble for Gene Function Prediction.
Proceedings of the Advanced Data Mining and Applications - 6th International Conference, 2010

Medical Document Clustering Using Ontology-Based Term Similarity Measures.
Proceedings of the Strategic Advancements in Utilizing Data Mining and Warehousing Technologies: New Concepts and Developments, 2010

A Graph-Based Biomedical Literature Clustering Approach Utilizing Term's Global and Local Importance Information.
Proceedings of the Strategic Advancements in Utilizing Data Mining and Warehousing Technologies: New Concepts and Developments, 2010

2009
Scalable Dynamic Fuzzy Biomolecular Network Models for Large Scale Biology.
Proceedings of the Fuzzy Systems in Bioinformatics and Computational Biology, 2009

Microarray Gene Cluster Identification and Annotation Through Cluster Ensemble and EM-Based Informative Textual Summarization.
IEEE Trans. Information Technology in Biomedicine, 2009

Mining, Modeling, and Evaluation of Subnetworks From Large Biomolecular Networks and Its Comparison Study.
IEEE Trans. Information Technology in Biomedicine, 2009

Robust Detection and Genotyping of Single Feature Polymorphisms from Gene Expression Data.
PLoS Computational Biology, 2009

A Dynamic and Semantically-Aware Technique for Document Clustering in Biomedical Literature.
IJDWM, 2009

AI for Global Disease Surveillance.
IEEE Intelligent Systems, 2009

Biclustering of microarray data with MOSPO based on crowding distance.
BMC Bioinformatics, 2009

Spatial Weighting for Bag-of-Visual-Words and Its Application in Content-Based Image Retrieval.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2009

Addressing the Variability of Natural Language Expression in Sentence Similarity with Semantic Structure of the Sentences.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2009

Exploiting Wikipedia as external knowledge for document clustering.
Proceedings of the 15th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Paris, France, June 28, 2009

AskDragon: a redundancy-based factoid question answering system with lightweight local context analysis.
Proceedings of the 2009 Joint International Conference on Digital Libraries, 2009

A new rough set model for knowledge acquisition in incomplete information system.
Proceedings of the 2009 IEEE International Conference on Granular Computing, 2009

Multi-objective ant colony optimization biclustering of microarray data.
Proceedings of the 2009 IEEE International Conference on Granular Computing, 2009

Predicting gene function with positive and unlabeled examples.
Proceedings of the 2009 IEEE International Conference on Granular Computing, 2009

Data mining in bioinformatics: challenges and opportunities.
Proceedings of the Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, 2009

Exploratory Analysis of Protein Translation Regulatory Networks Using Hierarchical Random Graphs.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

Microarray Biclustering with Crowding Based MOACO.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2008
Latent Semantic Space for Web Clustering.
Proceedings of the Data Mining: Foundations and Practice, 2008

Recursive Fuzzy Granulation for Gene Subsets Extraction and Cancer Classification.
IEEE Trans. Information Technology in Biomedicine, 2008

On blocks and coverings based on semi-equivalence relation in pansystems methodology.
Kybernetes, 2008

Medical Document Clustering Using Ontology-Based Term Similarity Measures.
IJDWM, 2008

A Graph-Based Biomedical Literature Clustering Approach Utilizing Term's Global and Local Importance Information.
IJDWM, 2008

Towards effective document clustering: A constrained K-means based approach.
Inf. Process. Manage., 2008

A Comparison and Scenario Analysis of Leading Data Mining Software.
IJKM, 2008

Methods for evaluating gene expression from Affymetrix microarray datasets.
BMC Bioinformatics, 2008

A comparative evaluation of different link types on enhancing document clustering.
Proceedings of the 31st Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, 2008

Semantic Smoothing for Bayesian Text Classification with Small Training Data.
Proceedings of the SIAM International Conference on Data Mining, 2008

Semantic representation in text classification using topic signature mapping.
Proceedings of the International Joint Conference on Neural Networks, 2008

Utilizing Semantic, Syntactic, and Question Category Information for Automated Digital Reference Services.
Proceedings of the Digital Libraries: Universal and Ubiquitous Access to Information, 2008

Combination of Granules, Rough Sets with Evidence Theory and its Application in Incomplete Data Fusion for Belief Estimation.
Proceedings of the 2008 IEEE International Conference on Granular Computing, 2008

Web Clustering based on the Information of Sibling Pages.
Proceedings of the 2008 IEEE International Conference on Granular Computing, 2008

Multi-objective Evolutionary Algorithm for Mining 3D Clusters in Gene-sample-time Microarray Data.
Proceedings of the 2008 IEEE International Conference on Granular Computing, 2008

A Novel Unsupervised Feature Selection Method for Bioinformatics Data Sets through Feature Clustering.
Proceedings of the 2008 IEEE International Conference on Granular Computing, 2008

A Finite Ranked Poset and its Application in Visualization of Association Rules.
Proceedings of the 2008 IEEE International Conference on Granular Computing, 2008

Document Clustering by Semantic Smoothing and Dynamic Growing Cell Structure (DynGCS) for Biomedical Literature.
Proceedings of the Data Warehousing and Knowledge Discovery, 10th International Conference, 2008

The Evaluation of Sentence Similarity Measures.
Proceedings of the Data Warehousing and Knowledge Discovery, 10th International Conference, 2008

Round-Trip Engineering for Maintaining Conceptual-Relational Mappings.
Proceedings of the Advanced Information Systems Engineering, 20th International Conference, 2008

A Mixture Language Model for Class-Attribute Mining from Biomedical Literature Digital Library.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

Towards a software diagnosis method based on rough set reasoning.
Proceedings of 8th IEEE International Conference on Computer and Information Technology, 2008

2007
Topic Signature Language Models for Ad hoc Retrieval.
IEEE Trans. Knowl. Data Eng., 2007

A Novel Approach for Mining and Fuzzy Simulation of Subnetworks From Large Biomolecular Networks.
IEEE Trans. Fuzzy Systems, 2007

Data Mining and Predictive Modeling of Biomolecular Network from Biomedical Literature Databases.
IEEE/ACM Trans. Comput. Biology Bioinform., 2007

Biomedical ontology improves biomedical literature clustering performance: a comparison study.
IJBRA, 2007

Prediction of the disulphide bridges in proteins using SVM.
IJBRA, 2007

Diminishing downsides of Data Mining.
IJBIDM, 2007

Integration of association rules and ontologies for semantic query expansion.
Data Knowl. Eng., 2007

A coherent graph-based semantic clustering and summarization approach for biomedical literature and a new summarization evaluation method.
BMC Bioinformatics, 2007

Mining and state-space modeling and verification of sub-networks from large-scale biomolecular networks.
BMC Bioinformatics, 2007

A New Decision Tree Classification Method for Mining High-Speed Data Streams Based on Threaded Binary Search Trees.
Proceedings of the Emerging Technologies in Knowledge Discovery and Data Mining, 2007

Workshop BioDM'07 - An Overview.
Proceedings of the Emerging Technologies in Knowledge Discovery and Data Mining, 2007

Semantic Smoothing of Document Models for Agglomerative Clustering.
Proceedings of the IJCAI 2007, 2007

Dragon Toolkit: Incorporating Auto-Learned Semantic Knowledge into Large-Scale Text Retrieval and Mining.
Proceedings of the 19th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2007), 2007

Mining and Dynamic Simulation of Sub-Networks from Large Biomolecular Networks.
Proceedings of the 2007 International Conference on Artificial Intelligence, 2007

An Incremental Algorithm for Mining Default Definite Decision Rules from Incomplete Decision Tables.
Proceedings of the 2007 IEEE International Conference on Granular Computing, 2007

Algorithms for Different Approximations in Incomplete Information Systems with Maximal Compatible Classes as Primitive Granules.
Proceedings of the 2007 IEEE International Conference on Granular Computing, 2007

Utilization of Global Ranking Information in Graph- Based Biomedical Literature Clustering.
Proceedings of the Data Warehousing and Knowledge Discovery, 9th International Conference, 2007

A Comparative Study of Ontology Based Term Similarity Measures on PubMed Document Clustering.
Proceedings of the Advances in Databases: Concepts, 2007

A segment-based hidden markov model for real-setting pinyin-to-chinese conversion.
Proceedings of the Sixteenth ACM Conference on Information and Knowledge Management, 2007

Ontology Based Clustering for Improving Genomic IR.
Proceedings of the 20th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2007), 2007

Biomedical Literature Mining.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

Using Two-Stage Concept-Based Singular Value Decomposition Technique as a Query Expansion Strategy.
Proceedings of the 21st International Conference on Advanced Information Networking and Applications (AINA 2007), 2007

A New Method of Cluster-Based Topic Language Model for Genomic IR.
Proceedings of the 21st International Conference on Advanced Information Networking and Applications (AINA 2007), 2007

2006
Making Better Sense of the Demographic Data Value in the Data Mining Procedure.
Proceedings of the Foundations and Novel Approaches in Data Mining, 2006

A semi-supervised efficient learning approach to extract biological relationships from web-based biomedical digital library.
Web Intelligence and Agent Systems, 2006

Relation-Based Document Retrieval for Biomedical IR.
, 2006

Anti-parallel Coiled Coils Structure Prediction by Support Vector Machine Classification.
, 2006

Designing a Data Warehouse for Cyber Crimes.
JDFSL, 2006

GE-Miner: integration of cluster ensemble and text mining for comprehensive gene expression analysis.
IJBRA, 2006

A Comparison of Local Analysis, Global Analysis and Ontology-based Query Expansion Strategies for Bio-medical Literature Search.
Proceedings of the IEEE International Conference on Systems, 2006

Knowledge Dependency Relationships in Incomplete Information System Based on Tolerance Relations.
Proceedings of the IEEE International Conference on Systems, 2006

Context-sensitive semantic smoothing for the language modeling approach to genomic IR.
Proceedings of the SIGIR 2006: Proceedings of the 29th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, 2006

A Semantic Approach for Mining Hidden Links from Complementary and Non-interactive Biomedical Literature.
Proceedings of the Sixth SIAM International Conference on Data Mining, 2006

Mining and analyzing the topological structure of protein-protein interaction networks.
Proceedings of the 2006 ACM Symposium on Applied Computing (SAC), 2006

Expanding Tolerance RST Models Based on Cores of Maximal Compatible Blocks.
Proceedings of the Rough Sets and Current Trends in Computing, 2006

MaxMatcher: Biological Concept Extraction Using Approximate Dictionary Lookup.
Proceedings of the PRICAI 2006: Trends in Artificial Intelligence, 2006

Clustering Large Collection of Biomedical Literature Based on Ontology-Enriched Bipartite Graph Representation and Mutual Refinement Strategy.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2006

Integration of semantic-based bipartite graph representation and mutual refinement strategy for biomedical literature clustering.
Proceedings of the Twelfth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2006

A comprehensive comparison study of document clustering for a biomedical digital library MEDLINE.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2006

Integration of Instance-Based Learning and Text Mining for Identification of Potential Virus/Bacterium as Bio-terrorism Weapons.
Proceedings of the Intelligence and Security Informatics, 2006

Semantic Smoothing for Model-based Document Clustering.
Proceedings of the 6th IEEE International Conference on Data Mining (ICDM 2006), 2006

Using UMLS-based Re-Weighting Terms as a Query Expansion Strategy.
Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006

Object oriented modeling of protein translation system.
Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006

Ensembles of classifiers based on rough sets theory and set-oriented database operations.
Proceedings of the 2006 IEEE International Conference on Granular Computing, 2006

Using Concept-Based Indexing to Improve Language Modeling Approach to Genomic IR.
Proceedings of the Advances in Information Retrieval, 2006

A Coherent Biomedical Literature Clustering and Summarization Approach Through Ontology-Enriched Graphical Representations.
Proceedings of the Data Warehousing and Knowledge Discovery, 8th International Conference, 2006

Relation-Based Document Retrieval for Biomedical Literature Databases.
Proceedings of the Database Systems for Advanced Applications, 2006

Integration of cluster ensemble and EM based text mining for microarray gene cluster identification and annotation.
Proceedings of the 2006 ACM CIKM International Conference on Information and Knowledge Management, 2006

Biomedical Ontology MeSH Improves Document Clustering Qualify on MEDLINE Articles: A Comparison Study.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

A Language Modeling Text Mining Approach to the Annotation of Protein Community.
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2005
KXtractor: An Effective Biomedical Information Extraction Technique Based on Mixture Hidden Markov Models.
Trans. Computational Systems Biology, 2005

Mining novel connections from online biomedical text databases using semantic query expansion and semantic-relationship pruning.
IJWGS, 2005

Wavelet transformation and cluster ensemble for gene expression analysis.
IJBRA, 2005

Mining and analysing scale-free proteinprotein interaction network.
IJBRA, 2005

Temporal rule induction for clinical outcome analysis.
IJBIDM, 2005

A Data Mining Approach for Retailing Bank Customer Attrition Analysis.
Appl. Intell., 2005

Feature Selection Based on Relative Attribute Dependency: An Experimental Study.
Proceedings of the Rough Sets, 2005

An Automatic Unsupervised Querying Algorithm for Efficient Information Extraction in Biomedical Domain.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2005

Mining Candidate Viruses as Potential Bio-terrorism Weapons from Biomedical Literature.
Proceedings of the Intelligence and Security Informatics, 2005

SVM Classification to Predict Two Stranded Anti-parallel Coiled Coils based on Protein Sequence Data.
Proceedings of the Computational Science and Its Applications, 2005

Integrating Text Chunking with Mixture Hidden Markov Models for Effective Biomedical Information Extraction.
Proceedings of the Computational Science, 2005

Visualization of protein-protein interaction network for knowledge discovery.
Proceedings of the 2005 IEEE International Conference on Granular Computing, 2005

Analysis of using granules to find association rules.
Proceedings of the 2005 IEEE International Conference on Granular Computing, 2005

Support vector machines with evolutionary interval neural networks for granular feature transformation in making effective biomedical data classification.
Proceedings of the 2005 IEEE International Conference on Granular Computing, 2005

A semantic-based approach for mining undiscovered public knowledge from biomedical literature.
Proceedings of the 2005 IEEE International Conference on Granular Computing, 2005

Semantic Query Expansion Combining Association Rules with Ontologies and Information Retrieval Techniques.
Proceedings of the Data Warehousing and Knowledge Discovery, 2005

Mining undiscovered public knowledge from complementary and non-interactive biomedical literature through semantic pruning.
Proceedings of the 2005 ACM CIKM International Conference on Information and Knowledge Management, Bremen, Germany, October 31, 2005

An Efficient Approach to Detect a Protein Community from a Seed.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

A Hybrid CI-Based Knowledge Discovery System on Microarray Gene Expression Data.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

Granular SVM-RFE Gene Selection Algorithm for Reliable Prostate Cancer Classification on Microarray Expression Data.
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005

2004
A data warehouse/online analytic processing framework for web usage mining and business intelligence reporting.
Int. J. Intell. Syst., 2004

A New Rough Sets Model Based on Database Systems.
Fundam. Inform., 2004

Ontology-Based Scalable and Portable Information Extraction System to Extract Biological Knowledge from Huge Collection of Biomedical Web Documents.
Proceedings of the 2004 IEEE/WIC/ACM International Conference on Web Intelligence (WI 2004), 2004

A Weighted Freshness Metric for Maintaining Search Engine Local Repository.
Proceedings of the 2004 IEEE/WIC/ACM International Conference on Web Intelligence (WI 2004), 2004

Feature Subset Selection Based on Relative Dependency between Attributes.
Proceedings of the Rough Sets and Current Trends in Computing, 2004

Intelligent Query Answering Based on Neighborhood Systems and Data Mining Techniques.
Proceedings of the 8th International Database Engineering and Applications Symposium (IDEAS 2004), 2004

Managing and Mining Clinical Outcomes.
Proceedings of the Database Systems for Advances Applications, 2004

Extracting and mining protein-protein interaction network from biomedical literature.
Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2004

Integration of Cluster Ensemble and Text Summarization for Gene Expression Analysis.
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004

Designing and developing an automatic interactive keyphrase extraction system with Unified Modeling Language (UML).
Proceedings of the Managing and Enhancing Information: Cultures and Conflicts, 2004

Cluster Ensemble and Its Applications in Gene Expression Analysis.
Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC 2004), 2004

Classification Comparison of Prediction of Solvent Accessibility From Protein Sequences.
Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC 2004), 2004

2003
Data-mining and Uncertain Reasoning: An Integrated Approach (Book Review).
Information Visualization, 2003

A visualization model of interactive knowledge discovery systems and its implementations.
Information Visualization, 2003

DB-HReduction: A data preprocessing algorithm for data mining applications.
Appl. Math. Lett., 2003

KPSpotter: a flexible information gain-based keyphrase extraction system.
Proceedings of the Fifth ACM CIKM International Workshop on Web Information and Data Management (WIDM 2003), 2003

A New Rough Sets Model Based on Database Systems.
Proceedings of the Rough Sets, 2003

An Efficient Algorithm for Computing Core Attributes in Database Systems.
Proceedings of the Foundations of Intelligent Systems, 14th International Symposium, 2003

Bitmap Techniques for Optimizing Decision Support Queries and Association Rule Algorithms.
Proceedings of the 7th International Database Engineering and Applications Symposium (IDEAS 2003), 2003

A fast association rule algorithm based on bitmap and granular computing.
Proceedings of the 12th IEEE International Conference on Fuzzy Systems, 2003

Using attribute value lattice to find closed frequent itemsets.
Proceedings of the Data Mining and Knowledge Discovery: Theory, 2003

A New Computation Model for Rough Set Theory Based on Database Systems.
Proceedings of the Data Warehousing and Knowledge Discovery, 5th International Conference, 2003

Discovering Cyber Communities from the WWW.
Proceedings of the 27th International Computer Software and Applications Conference (COMPSAC 2003): Design and Assessment of Trustworthy Software-Based Systems, 2003

2002
From Computational Intelligence to Web Intelligence.
IEEE Computer, 2002

Comparison of Classification Methods for Customer Attrition Analysis.
Proceedings of the Rough Sets and Current Trends in Computing, 2002

2001
Discovering Maximal Generalized Decision Rules Through Horixontal and Vertical Data Reduction.
Computational Intelligence, 2001

Using Rough Sets Theory and Database Operations to Construct a Good Ensemble of Classifiers for Data Mining Applications.
Proceedings of the 2001 IEEE International Conference on Data Mining, 29 November, 2001

2000
Supervised Learning: A Generalized Rough Set Approach.
Proceedings of the Rough Sets and Current Trends in Computing, 2000

Learning Pseudo-independent Models: Analytical and Experimental Results.
Proceedings of the Advances in Artificial Intelligence, 2000

1999
Data Mining via Discretization, Generalization and Rough Set Feature Selection.
Knowl. Inf. Syst., 1999

1997
Learning Maximal Generalized Decision Rules via Discretization, Generalization, and Rough Set Feature Selection.
Proceedings of the 9th International Conference on Tools with Artificial Intelligence, 1997

1996
Rule Discovery from Databases with Decision Matrices.
Proceedings of the Foundations of Intelligent Systems, 9th International Symposium, 1996

Mining Knowledge Rules from Databases: A Rough Set Approach.
Proceedings of the Twelfth International Conference on Data Engineering, February 26, 1996

1995
Learning in Relational Databases: A Rough Set Approach.
Computational Intelligence, 1995

Rough Sets Similarity-Based Learning from Databases.
Proceedings of the First International Conference on Knowledge Discovery and Data Mining (KDD-95), 1995

A Decision Matrix Approach for Constructing Multiple Knowledge Bases System.
Proceedings of the Eighth International Conference on Industrial and Engineering Applications of Artificial Intelligence and Expert Systems, 1995

1994
Learning Data Trend Regularities From Databases in a Dynamic Environment.
Proceedings of the Knowledge Discovery in Databases: Papers from the 1994 AAAI Workshop, 1994

DBROUGH: A Rough Set Based Knowledge Discovery System.
Proceedings of the Methodologies for Intelligent Systems, 8th International Symposium, 1994

Discovery of Decision Rules in Relational Databases: A Rough Set Approach.
Proceedings of the Third International Conference on Information and Knowledge Management (CIKM'94), Gaithersburg, Maryland, USA, November 29, 1994

1993
An Attribute-Oriented Rough Set Approach for Knowledge Discovery in Databases.
Proceedings of the Rough Sets, 1993


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