Yidong Chen

According to our database1, Yidong Chen
  • authored at least 116 papers between 1992 and 2018.
  • has a "Dijkstra number"2 of four.

Timeline

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Bibliography

2018
MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data.
IEEE/ACM Trans. Comput. Biology Bioinform., 2018

Lattice-to-sequence attentional Neural Machine Translation models.
Neurocomputing, 2018

2017
Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net.
IEEE/ACM Trans. Comput. Biology Bioinform., 2017

Co-training for Implicit Discourse Relation Recognition Based on Manual and Distributed Features.
Neural Processing Letters, 2017

Leveraging bilingually-constrained synthetic data via multi-task neural networks for implicit discourse relation recognition.
Neurocomputing, 2017

Computational tools for genome-wide R-loops identification and characterisation.
I. J. Computational Biology and Drug Design, 2017

A synergetic semantic role labeling model with the introduction of fluctuating force accompanied with word sense information.
Intell. Data Anal., 2017

Deep Semantic Role Labeling with Self-Attention.
CoRR, 2017

XBSeq2: a fast and accurate quantification of differential expression and differential polyadenylation.
BMC Bioinformatics, 2017

Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival.
BMC Bioinformatics, 2017

XMU Neural Machine Translation Systems for WMT 17.
Proceedings of the Second Conference on Machine Translation, 2017

XMU Neural Machine Translation Online Service.
Proceedings of the IJCNLP 2017, Tapei, Taiwan, November 27, 2017

A microblog dataset for tibetan sentiment analysis.
Proceedings of the 2017 International Conference on Asian Language Processing, 2017

Deriving Probabilistic Semantic Frames from HowNet.
Proceedings of the Chinese Lexical Semantics - 18th Workshop, 2017

XMU Neural Machine Translation Systems for WAT 2017.
Proceedings of the 4th Workshop on Asian Translation, 2017

Improving Implicit Discourse Relation Recognition with Discourse-specific Word Embeddings.
Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics, 2017

2016
An SNN-Based Semantic Role Labeling Model with Its Network Parameters Optimized Using an Improved PSO Algorithm.
Neural Processing Letters, 2016

An improving SRL model with word sense information using an improved synergetic neural network model.
Journal of Intelligent and Fuzzy Systems, 2016

Sentiment analysis via integrating distributed representations of variable-length word sequence.
Neurocomputing, 2016

An Integration Model of Semantic Annotation Based on Synergetic Neural Network.
Intelligent Automation & Soft Computing, 2016

A simple gene set-based method accurately predicts the synergy of drug pairs.
BMC Systems Biology, 2016

A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data.
Bioinformatics, 2016

Bilingually-constrained Synthetic Data for Implicit Discourse Relation Recognition.
Proceedings of the 2016 Conference on Empirical Methods in Natural Language Processing, 2016

Coping with Problems of Unicoded Traditional Mongolian.
Proceedings of the Chinese Computational Linguistics and Natural Language Processing Based on Naturally Annotated Big Data, 2016

A Sentence Segmentation Method for Ancient Chinese Texts Based on NNLM.
Proceedings of the Chinese Lexical Semantics - 17th Workshop, 2016

2015
MeT-DB: a database of transcriptome methylation in mammalian cells.
Nucleic Acids Research, 2015

Intelligent Cloud Learning Model for Online Overseas Chinese Education.
iJET, 2015

Unsupervised word sense induction using rival penalized competitive learning.
Eng. Appl. of AI, 2015

Log-Linear Model Based Behavior Selection Method for Artificial Fish Swarm Algorithm.
Comp. Int. and Neurosc., 2015

Patho-finder - A fast and accurate program for pathogen identification through RNA-seq.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Model-based and context-specific background correction and differential methylation testing for MBDCap-seq.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Analyzing differential regulatory networks modulated by continuous-state genomic features in glioblastoma multiforme.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Selected Articles from the 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS 2012).
IEEE/ACM Trans. Comput. Biology Bioinform., 2014

Topic-aware pivot language approach for statisticalmachine translation.
Journal of Zhejiang University - Science C, 2014

A Two-Stage Exon Recognition Model Based on Synergetic Neural Network.
Comp. Math. Methods in Medicine, 2014

BIMMER: a novel algorithm for detecting differential DNA methylation regions from MBDCap-seq data.
BMC Bioinformatics, 2014

A novel significance score for gene selection and ranking.
Bioinformatics, 2014

On-going Cooperative Research towards Developing Economy-Oriented Chinese-French SMT Systems with a New SMT Framework.
Proceedings of the Traitement Automatique des Langues Naturelles, 2014

Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test.
Proceedings of the 2014 IEEE Global Conference on Signal and Information Processing, 2014

2013
Estimating Conditional Probabilities for the Detection of Unfavorable Copy Number Alterations in a Targeted Therapy.
IEEE Trans. Biomed. Engineering, 2013

A Prototype Patterns Selection Algorithm Based on Semi-supervised Learning.
JSW, 2013

Identification of genomic functional hotspots with copy number alteration in liver cancer.
EURASIP J. Bioinformatics and Systems Biology, 2013

BRCA-Monet: a breast cancer specific drug treatment mode-of-action network for treatment effective prediction using large scale microarray database.
BMC Systems Biology, 2013

Exome-based analysis for RNA epigenome sequencing data.
Bioinformatics, 2013

Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis.
Adv. Bioinformatics, 2013

Differential analysis of rna methylation sequencing data.
Proceedings of the IEEE Global Conference on Signal and Information Processing, 2013

NetceRNA: An algorithm for construction of phenotype-specific regulation networks via competing endogenous RNAs.
Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013

An HMM-based Exome Peak-finding package for RNA epigenome sequencing data.
Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013

Characterization of conditions for competing endogenous RNA regulation in GBM.
Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013

Improving Alignment of System Combination by Using Multi-objective Optimization.
Proceedings of the 2013 Conference on Empirical Methods in Natural Language Processing, 2013

Integration of gene expression, genome wide DNA methylation, and gene networks for clinical outcome prediction in ovarian cancer.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Unveiling the dynamics in RNA epigenetic regulations.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

BIMMER: A Bi-layer hidden Markov model for differential methylation analysis.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Modeling competing endogenous RNA regulatory networks in glioblastoma multiforme.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Evaluating Dynamic Effects of Copy Number Alterations on Gene Expression Using a Single Transcription Model.
IEEE Trans. Biomed. Engineering, 2012

Stochastic Modeling of the Relationship between Copy Number and Gene Expression Based on Transcriptional Logic.
IEEE Trans. Biomed. Engineering, 2012

Temporal clustering of gene expression patterns using short-time segments.
I. J. Functional Informatics and Personalised Medicine, 2012

An Approach to N-Gram Language Model Evaluation in Phrase-Based Statistical Machine Translation.
Proceedings of the 2012 International Conference on Asian Language Processing, 2012

An investigation of clinical outcome prediction from integrative genomic profiles in ovarian cancer.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

Identification of functional genomic regions with copy number alteration in liver cancer.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

Using gene sets to identify putative drugs for breast cancer.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Learning Chinese Entity Attributes from Online Encyclopedia.
Proceedings of the Web Technologies and Applications, 2012

Translation Model Adaptation for Statistical Machine Translation with Monolingual Topic Information.
Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics, Proceedings of the Conference, July 8-14, 2012, Jeju Island, Korea, 2012

Combined Cache Policy for Service Workflow Execution Acceleration.
Proceedings of the 2012 International Conference on Cloud and Service Computing, 2012

2011
Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor model.
Proceedings of the IEEE International Conference on Acoustics, 2011

A Simplified-Traditional Chinese Character Conversion Model Based on Log-Linear Models.
Proceedings of the International Conference on Asian Language Processing, 2011

Computational prediction of microRNA regulatory pathways.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Identifying genes associated with chemotherapy response in ovarian carcinomas based on DNA copy number and expression profiles.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Stochastic modeling of dynamic effects of copy number alterations upon gene expression levels.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Multisource biological pathway consolidation.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

S-score: A novel scoring method of gene signatures for molecular classification.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Comprehensive investigation of connectivity map data-towards a drug mode of action network for personalized thnerapy.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Gene sets enrichment analysis of miRNA expression profile.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010
Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor Model.
EURASIP J. Adv. Sig. Proc., 2010

Improving performance of mammalian microRNA target prediction.
BMC Bioinformatics, 2010

SysMicrO: A Novel Systems Approach for miRNA Target Prediction.
Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2010

An iterated conditional mode solution for Bayesian factor modeling of transcriptional regulatory networks.
Proceedings of the 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, 2010

An Iterated Conditional Modes solution for sparse Bayesian factor modeling of transcriptional regulatory networks.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

A Bayesian decision fusion approach for microRNA target prediction.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

Constructing a compound mode-of-action network for personalized drug effectiveness prediction.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

Chinese Personal Name Disambiguation: Technical Report of Natural Language Processing Lab of Xiamen University.
Proceedings of the CIPS-SIGHAN Joint Conference on Chinese Language Processing, 2010

Chinese Word Sense Induction based on Hierarchical Clustering Algorithm.
Proceedings of the CIPS-SIGHAN Joint Conference on Chinese Language Processing, 2010

2009
A word alignment model based on multiobjective evolutionary algorithms.
Computers & Mathematics with Applications, 2009

Mapping miRNA Regulation to Functional Gene Sets.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

A comprehensive study of a SVM-based miRNA target prediction algorithm.
Proceedings of the 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, 2009

2008
GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus.
Bioinformatics, 2008

A probe-density-based analysis method for array CGH data: simulation, normalization and centralization.
Bioinformatics, 2008

A probe-density-based analysis method for array CGH data: simulation, normalization and centralization.
Bioinformatics, 2008

A chunk-based reordering model for phrase-based SMT systems.
Proceedings of the 4th International Conference on Natural Language Processing and Knowledge Engineering, 2008

Automatic Acquisition of Phrase Semantic Rule for Chinese.
Proceedings of the Information Retrieval Technology, 2008

2007
The XMU SMT system for IWSLT 2007.
Proceedings of the 2007 International Workshop on Spoken Language Translation, 2007

Translation Memory Sharing Models in XMCAT.
Proceedings of the 11th International Conference on Computer Supported Cooperative Work in Design, 2007

Dependency-Based Chinese-English Statistical Machine Translation.
Proceedings of the Computational Linguistics and Intelligent Text Processing, 2007

2006
Normalization Benefits Microarray-Based Classification.
EURASIP J. Bioinformatics and Systems Biology, 2006

The XMU phrase-based statistical machine translation system for IWSLT 2006.
Proceedings of the 2006 International Workshop on Spoken Language Translation, 2006

2005
Optimal robust classifiers.
Pattern Recognition, 2005

2004
The Local Maximum Clustering Method and Its Application in Microarray Gene Expression Data Analysis.
EURASIP J. Adv. Sig. Proc., 2004

Editorial.
EURASIP J. Adv. Sig. Proc., 2004

Which is better for cDNA-microarray-based classification: ratios or direct intensities.
Bioinformatics, 2004

Are We There Yet? Genomic Profiling and Mechanism in Cancer Research.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2002
Strong Feature Sets from Small Samples.
Journal of Computational Biology, 2002

Inference from Clustering with Application to Gene-Expression Microarrays.
Journal of Computational Biology, 2002

Assessing the significance of consistently mis-regulated genes in cancer associated gene expression matrices.
Bioinformatics, 2002

Ratio statistics of gene expression levels and applications to microarray data analysis.
Bioinformatics, 2002

E-CAST: A Data Mining Algorithm for Gene Expression Data.
Proceedings of the 2nd ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2002), 2002

IP Multicasting Technique and its Application on Multimedia Network Teaching System.
Proceedings of the Seventh International Conference on CSCW in Design, 2002

2001
Robust optimal granulometric bandpass filters.
Signal Processing, 2001

2000
Coefficient of determination in nonlinear signal processing.
Signal Processing, 2000

1999
Markovian Analysis of Adaptive Reconstructive Multiparameter tau-Openings.
Journal of Mathematical Imaging and Vision, 1999

Nonlinear filters in genomic control.
Proceedings of the IEEE-EURASIP Workshop on Nonlinear Signal and Image Processing (NSIP'99), 1999

1997
Optimal and adaptive reconstructive granulometric bandpass filters.
Signal Processing, 1997

1996
Bayesian morphological peak estimation and its application to chromosome counting via fluorescence In situ hybridization.
Pattern Recognition, 1996

Adaptive reconstructive tau-openings: convergence and the steady-state distribution.
J. Electronic Imaging, 1996

Optimal and Adaptive Design of Reconstructive Granulometric Filters.
Proceedings of the 3th International Symposium on Mathematical Morphology and its Applications to Image and Signal Processing, 1996

1994
Adaptive Parameterized Openings.
Proceedings of the 2nd International Symposium on Mathematical Morphology and Its Applications to Image Processing, 1994

1992
Estimation of optimal morphological τ-opening parameters based on independent observation of signal and noise pattern spectra.
Signal Processing, 1992


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