Ziding Zhang

According to our database, Ziding Zhang authored at least 18 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Multi-modal features-based human-herpesvirus protein-protein interaction prediction by using LightGBM.

Xiaodi Yang, Stefan Wuchty, Zeyin Liang, Li Ji, Bingjie Wang, Jialin Zhu, Ziding Zhang, Yujun Dong

Briefings Bioinform., January, 2024

2023

SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network.

Yan Huang, Stefan Wuchty, Yuan Zhou, Ziding Zhang

Briefings Bioinform., March, 2023

2021

Transfer learning via multi-scale convolutional neural layers for human-virus protein-protein interaction prediction.

Xiaodi Yang, Shiping Yang, Xianyi Lian, Stefan Wuchty, Ziding Zhang

Bioinform., 2021

HVIDB: a comprehensive database for human-virus protein-protein interactions.

Xiaodi Yang, Xianyi Lian, Chen Fu, Stefan Wuchty, Shiping Yang, Ziding Zhang

Briefings Bioinform., 2021

Current status and future perspectives of computational studies on human-virus protein-protein interactions.

Xianyi Lian, Xiaodi Yang, Shiping Yang, Ziding Zhang

Briefings Bioinform., 2021

Multi-scale Convolutional Neural Networks for the Prediction of Human-virus Protein Interactions.

Xiaodi Yang, Ziding Zhang, Stefan Wuchty

Proceedings of the 13th International Conference on Agents and Artificial Intelligence, 2021

2020

Prediction and analysis of human-herpes simplex virus type 1 protein-protein interactions by integrating multiple methods.

Xianyi Lian, Xiaodi Yang, Jiqi Shao, Fujun Hou, Shiping Yang, Dongli Pan, Ziding Zhang

Quant. Biol., 2020

2019

Critical assessment and performance improvement of plant-pathogen protein-protein interaction prediction methods.

Shiping Yang, Hong Li, Huaqin He, Yuan Zhou, Ziding Zhang

Briefings Bioinform., 2019

Prediction of protein-protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.).

Shiwei Ma, Qi Song, Huan Tao, Andrew P. Harrison, Shaobo Wang, Wei Liu, Shoukai Lin, Ziding Zhang, Yufang Ai, Huaqin He

Briefings Bioinform., 2019

2018

PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System.

Huan Qi, Zhenhong Jiang, Kang Zhang, Shiping Yang, Fei He, Ziding Zhang

Genom. Proteom. Bioinform., 2018

2015

MAPanalyzer: a novel online tool for analyzing microtubule-associated proteins.

Yuan Zhou, Shiping Yang, Tonglin Mao, Ziding Zhang

Database J. Biol. Databases Curation, 2015

BEAN 2.0: an integrated web resource for the identification and functional analysis of type III secreted effectors.

Xiaobao Dong, Xiaotian Lu, Ziding Zhang

Database J. Biol. Databases Curation, 2015

Towards more accurate prediction of ubiquitination sites: a comprehensive review of current methods, tools and features.

Zhen Chen, Yuan Zhou, Ziding Zhang, Jiangning Song

Briefings Bioinform., 2015

2011

Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments.

Chuan Wang, Ren-Xiang Yan, Xiao-Feng Wang, Jing-Na Si, Ziding Zhang

Comput. Biol. Chem., 2011

Outer membrane proteins can be simply identified using secondary structure element alignment.

Ren-Xiang Yan, Zhen Chen, Ziding Zhang

BMC Bioinform., 2011

2009

DescFold: A web server for protein fold recognition.

Ren-Xiang Yan, Jing-Na Si, Chuan Wang, Ziding Zhang

BMC Bioinform., 2009

2008

Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of <i>k</i>-spaced amino acid pairs.

Yong-Zi Chen, Yu-Rong Tang, Zhi-Ya Sheng, Ziding Zhang

BMC Bioinform., 2008

2006

Comparison of a homology model and the crystallographic structure of human 11β-hydroxysteroid dehydrogenase type 1 (11βHSD1) in a structure-based identification of inhibitors.

Laurence Miguet, Ziding Zhang, Maryse Barbier, Martin G. Grigorov

J. Comput. Aided Mol. Des., 2006