Zlatko Trajanoski

According to our database, Zlatko Trajanoski authored at least 29 papers between 2002 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction.

Dietmar Rieder, Georgios Fotakis, Markus Ausserhofer, Rene Geyeregger, Wolfgang Paster, Zlatko Trajanoski, Francesca Finotello

Bioinform., 2022

2020

Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data.

Gregor Sturm, Tamás Szabó, Georgios Fotakis, Marlene Haider, Dietmar Rieder, Zlatko Trajanoski, Francesca Finotello

Bioinform., 2020

NeoFuse: predicting fusion neoantigens from RNA sequencing data.

Georgios Fotakis, Dietmar Rieder, Marlene Haider, Zlatko Trajanoski, Francesca Finotello

Bioinform., 2020

2017

TIminer: NGS data mining pipeline for cancer immunology and immunotherapy.

Elias Tappeiner, Francesca Finotello, Pornpimol Charoentong, Clemens Mayer, Dietmar Rieder, Zlatko Trajanoski

Bioinform., 2017

2016

meRanTK: methylated RNA analysis ToolKit.

Dietmar Rieder, Thomas Amort, Elisabeth Kugler, Alexandra Lusser, Zlatko Trajanoski

Bioinform., 2016

2014

SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases.

Dominik Schweiger, Zlatko Trajanoski, Stephan Pabinger

BMC Bioinform., 2014

Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages.

Andreas Dander, Matthias Baldauf, Michael Sperk, Stephan Pabinger, Benjamin Hiltpolt, Zlatko Trajanoski

BMC Bioinform., 2014

MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data.

Stephan Pabinger, René Snajder, Timo Hardiman, Michaela Willi, Andreas Dander, Zlatko Trajanoski

Database J. Biol. Databases Curation, 2014

A survey of tools for variant analysis of next-generation genome sequencing data.

Stephan Pabinger, Andreas Dander, Maria Fischer, René Snajder, Michael Sperk, Mirjana Efremova, Birgit Krabichler, Michael R. Speicher, Johannes Zschocke, Zlatko Trajanoski

Briefings Bioinform., 2014

2013

Mathematical models for translational and clinical oncology.

Ralf Gallasch, Mirjana Efremova, Pornpimol Charoentong, Hubert Hackl, Zlatko Trajanoski

J. Clin. Bioinform., 2013

GPViz: dynamic visualization of genomic regions and variants affecting protein domains.

René Snajder, Zlatko Trajanoski, Hubert Hackl

Bioinform., 2013

2011

MEMOSys: Bioinformatics platform for genome-scale metabolic models.

Stephan Pabinger, Robert Rader, Rasmus Agren, Jens Nielsen, Zlatko Trajanoski

BMC Syst. Biol., 2011

2009

iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis.

Gernot Stocker, Maria Fischer, Dietmar Rieder, Gabriela Bindea, Simon Kainz, Michael Oberstolz, James G. McNally, Zlatko Trajanoski

BMC Bioinform., 2009

QPCR: Application for real-time PCR data management and analysis.

Stephan Pabinger, Gerhard G. Thallinger, René Snajder, Heiko Eichhorn, Robert Rader, Zlatko Trajanoski

BMC Bioinform., 2009

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks.

Gabriela Bindea, Bernhard Mlecnik, Hubert Hackl, Pornpimol Charoentong, Marie Tosolini, Amos Kirilovsky, Wolf-Herman Fridman, Franck Pagès, Zlatko Trajanoski, Jérôme Galon

Bioinform., 2009

2007

TAMEE: data management and analysis for tissue microarrays.

Gerhard G. Thallinger, Kerstin Baumgartner, Martin Pirklbauer, Martina Uray, Elke Pauritsch, Gabor Mehes, Charles R. Buck, Kurt Zatloukal, Zlatko Trajanoski

BMC Bioinform., 2007

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.

Jürgen Hartler, Gerhard G. Thallinger, Gernot Stocker, Alexander Sturn, Thomas R. Burkard, Erik Körner, Robert Rader, Andreas Schmidt, Karl Mechtler, Zlatko Trajanoski

BMC Bioinform., 2007

2006

CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis.

Johannes Rainer, Fátima Sánchez-Cabo, Gernot Stocker, Alexander Sturn, Zlatko Trajanoski

Nucleic Acids Res., 2006

2005

PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways.

Bernhard Mlecnik, Marcel Scheideler, Hubert Hackl, Jürgen Hartler, Fátima Sánchez-Cabo, Zlatko Trajanoski

Nucleic Acids Res., 2005

MARS: Microarray analysis, retrieval, and storage system.

Michael Maurer, Robert Molidor, Alexander Sturn, Jürgen Hartler, Hubert Hackl, Gernot Stocker, Andreas Prokesch, Marcel Scheideler, Zlatko Trajanoski

BMC Bioinform., 2005

A quantization method based on threshold optimization for microarray short time series.

Barbara Di Camillo, Fátima Sánchez-Cabo, Gianna Toffolo, Sreekumaran K. Nair, Zlatko Trajanoski, Claudio Cobelli

BMC Bioinform., 2005

Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data.

J. S. Yu, Stefano Ongarello, R. Fiedler, X. W. Chen, Gianna Toffolo, Claudio Cobelli, Zlatko Trajanoski

Bioinform., 2005

A fully Bayesian model to cluster gene-expression profiles.

C. Vogl, Fátima Sánchez-Cabo, Gernot Stocker, Simon J. Hubbard, Olaf Wolkenhauer, Zlatko Trajanoski

Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

2004

ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster.

Gernot Stocker, Dietmar Rieder, Zlatko Trajanoski

Bioinform., 2004

ArrayNorm: comprehensive normalization and analysis of microarray data.

Roland Pieler, Fátima Sánchez-Cabo, Hubert Hackl, Gerhard G. Thallinger, Zlatko Trajanoski

Bioinform., 2004

2003

Java editor for biological pathways.

Elmar Trost, Hubert Hackl, Michael Maurer, Zlatko Trajanoski

Bioinform., 2003

Client-Server environment for high-performance gene expression data analysis.

Alexander Sturn, Bernhard Mlecnik, Roland Pieler, Johannes Rainer, Thomas Truskaller, Zlatko Trajanoski

Bioinform., 2003

2002

YPL.db: the Yeast Protein Localization database.

Georg Habeler, Klaus Natter, Gerhard G. Thallinger, Matthew E. Crawford, Sepp D. Kohlwein, Zlatko Trajanoski

Nucleic Acids Res., 2002

Genesis: cluster analysis of microarray data.

Alexander Sturn, John Quackenbush, Zlatko Trajanoski

Bioinform., 2002