Zoran Nikoloski
Orcid: 0000-0003-2671-6763
According to our database1,
Zoran Nikoloski
authored at least 41 papers
between 2007 and 2023.
Collaborative distances:
Collaborative distances:
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Online presence:
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on zbmath.org
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on orcid.org
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on d-nb.info
On csauthors.net:
Bibliography
2023
PLoS Comput. Biol., October, 2023
Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection.
PLoS Comput. Biol., 2023
Maximizing multi-reaction dependencies provides more accurate and precise predictions of intracellular fluxes than the principle of parsimony.
PLoS Comput. Biol., 2023
2022
COMMIT: Consideration of metabolite leakage and community composition improves microbial community reconstructions.
PLoS Comput. Biol., 2022
CUBCO+: prediction of protein complexes based on min-cut network partitioning into biclique spanned subgraphs.
Appl. Netw. Sci., 2022
2021
Theor. Comput. Sci., 2021
Maximization of non-idle enzymes improves the coverage of the estimated maximal in vivo enzyme catalytic rates in Escherichia coli.
Bioinform., 2021
GeneReg: a constraint-based approach for design of feasible metabolic engineering strategies at the gene level.
Bioinform., 2021
L2, 1-norm regularized multivariate regression model with applications to genomic prediction.
Bioinform., 2021
2020
PLoS Comput. Biol., 2020
2019
2017
On the effects of alternative optima in context-specific metabolic model predictions.
PLoS Comput. Biol., 2017
2016
DeFiNe: an optimisation-based method for robust disentangling of filamentous networks.
CoRR, 2016
Biosyst., 2016
iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models.
Bioinform., 2016
2015
Sensitivity of Contending Cellular Objectives in the Central Carbon Metabolism of Escherichia Coli.
Proceedings of the Information Processing in Cells and Tissues, 2015
2014
Proceedings of the Discrete and Topological Models in Molecular Biology, 2014
Variability of Metabolite Levels Is Linked to Differential Metabolic Pathways in Arabidopsis's Responses to Abiotic Stresses.
PLoS Comput. Biol., 2014
Math. Comput. Simul., 2014
2013
Computational metabolic engineering of Arabidopsis thaliana for increased biomass production.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013
Proceedings of the Euro-Par 2013 Parallel Processing, 2013
2012
Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli.
BMC Syst. Biol., 2012
Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations.
BMC Syst. Biol., 2012
Biosyst., 2012
Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks.
Bioinform., 2012
2011
Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study.
BMC Bioinform., 2011
Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities.
Biosyst., 2011
Bioinform., 2011
2010
A novel approach for determining environment-specific protein costs: the case of <i>Arabidopsis thaliana</i>.
Bioinform., 2010
2008
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008
2007
Proceedings of the Graph-Theoretic Concepts in Computer Science, 2007