Aaron Golden

According to our database, Aaron Golden authored at least 18 papers between 2003 and 2020.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2020

AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX.

Kevin R. Shieh, Christina Kratschmer, Keith E. Maier, John M. Greally, Matthew Levy, Aaron Golden

Bioinform., 2020

2016

Understanding the Systems Biology of Pathogen Virulence Using Semantic Methodologies.

David Rhee, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden

Proceedings of the Tenth IEEE International Conference on Semantic Computing, 2016

2015

Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach.

Pilib Ó Broin, Terry J. Smith, Aaron Golden

BMC Bioinform., 2015

toxoMine: an integrated omics data warehouse for <i>Toxoplasma gondii</i> systems biology research.

David B. Rhee, Matthew McKnight Croken, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden

Database J. Biol. Databases Curation, 2015

2014

Using SAGA and the Open Science Grid to Search for Aptamers.

Kevin R. Shieh, Pilib Ó Broin, David Rhee, Matthew Levy, Aaron Golden

Proceedings of the Annual Conference of the Extreme Science and Engineering Discovery Environment, 2014

2013

Gene-set analysis is severely biased when applied to genome-wide methylation data.

Paul Geeleher, Lori Hartnett, Laurance J. Egan, Aaron Golden, Raja Affendi Raja Ali, Cathal Seoighe

Bioinform., 2013

'Spring through the gateway': deploying genomic workflows with XSEDE.

David Rhee, Joseph Hargitai, R. Brent Calder, Pilib Ó Broin, Kevin R. Shieh, Aaron Golden

Proceedings of the Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013

2012

The Einstein Genome Gateway using WASP - A High Throughput Multi-Layered Life Sciences Portal for XSEDE.

Aaron Golden, Andrew S. McLellan, Robert A. Dubin, Qiang Jing, Pilib Ó Broin, David Moskowitz, Zhengdong Zhang, Masako Suzuki, Joseph Hargitai, R. Brent Calder, John M. Greally

Proceedings of the HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, 2012

2009

Opendda: a Novel High-Performance Computational Framework for the Discrete Dipole Approximation.

James Mc Donald, Aaron Golden, S. Gerard Jennings

Int. J. High Perform. Comput. Appl., 2009

BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server.

Paul Geeleher, Dermot Morris, John P. Hinde, Aaron Golden

Bioinform., 2009

2007

Thermodynamically constrained steady state solution space of the E. coli metabolic network.

Ronan M. T. Fleming, Aaron Golden, Heinz-Peter Nasheuer

BMC Syst. Biol., 2007

2006

Self-organizing neural networks to support the discovery of DNA-binding motifs.

Shaun Mahony, Panayiotis V. Benos, Terry J. Smith, Aaron Golden

Neural Networks, 2006

Gene Prediction in Metagenomic Libraries Using the Self Organising Map and High Performance Computing Techniques.

Nigel McCoy, Shaun Mahony, Aaron Golden

Proceedings of the Distributed, 2006

2005

Transcription factor binding site identification using the self-organizing map.

Shaun Mahony, David Hendrix, Aaron Golden, Terry J. Smith, Daniel S. Rokhsar

Bioinform., 2005

Self-Organizing Maps of Position Weight Matrices for Motif Discovery in Biological Sequences.

Shaun Mahony, David Hendrix, Terry J. Smith, Aaron Golden

Artif. Intell. Rev., 2005

Improved detection of DNA motifs using a self-organized clustering of familial binding profiles.

Shaun Mahony, Aaron Golden, Terry J. Smith, Panayiotis V. Benos

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2004

Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models.

Shaun Mahony, James O. McInerney, Terry J. Smith, Aaron Golden

BMC Bioinform., 2004

2003

A New Approach to Gene Prediction Using the Self-Organizing Map.

Shaun Mahony, Terry J. Smith, James O. McInerney, Aaron Golden

Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003