Julie M. Sullivan

According to our database, Julie M. Sullivan authored at least 19 papers between 2002 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2022

HumanMine: advanced data searching, analysis and cross-species comparison.

Rachel Lyne, Adrián Bazaga, Daniela Butano, Sergio Contrino, Joshua Heimbach, Fengyuan Hu, Alex Kalderimis, Mike Lyne, Kevin Herald Reierskog, Radek Stepan, Julie M. Sullivan, Archie Wise, Yo Yehudi, Gos Micklem

Database J. Biol. Databases Curation, 2022

2019

InterMineR: an R package for InterMine databases.

Konstantinos A Kyritsis, Bing Wang, Julie M. Sullivan, Rachel Lyne, Gos Micklem

Bioinform., 2019

Implementing FAIR Principles in InterMine.

Daniela Butano, Justin Clark-Casey, Sergio Contrino, Joshua Heimbach, Rachel Lyne, Kevin Herald Reierskog, Julie M. Sullivan, Yo Yehudi, Gos Micklem

Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019

2018

The InterMine Android app: Cross-organism genomic data in your pocket.

Daria Komkova, Rachel Lyne, Julie M. Sullivan, Yo Yehudi, Gos Micklem

F1000Research, 2018

JAMI: a Java library for molecular interactions and data interoperability.

M. Sivade Dumousseau, Maximilian Koch, Anjali Shrivastava, Diego Alonso-López, Javier De Las Rivas, Noemi del-Toro, Colin W. Combe, Birgit H. M. Meldal, Joshua Heimbach, Juri Rappsilber, Julie M. Sullivan, Yo Yehudi, Sandra E. Orchard

BMC Bioinform., 2018

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.

M. Sivade Dumousseau, Diego Alonso-López, Mais G. Ammari, Glyn Bradley, Nancy H. Campbell, Arnaud Céol, Gianni Cesareni, Colin W. Combe, Javier De Las Rivas, Noemi del-Toro, Joshua Heimbach, Henning Hermjakob, Igor Jurisica, Maximilian Koch, Luana Licata, Ruth C. Lovering, David J. Lynn, Birgit H. M. Meldal, Gos Micklem, Simona Panni, Pablo Porras, Sylvie Ricard-Blum, Bernd Roechert, Lukasz Salwínski, Anjali Shrivastava, Julie M. Sullivan, Nicolas Thierry-Mieg, Yo Yehudi, Kim Van Roey, Sandra E. Orchard

BMC Bioinform., 2018

2016

Making Linked Data SPARQL with the InterMine Biological Data Warehouse.

Maxime Déraspe, Gail Binkley, Daniela Butano, Matthew Chadwick, J. Michael Cherry, Justin Clark-Casey, Sergio Contrino, Jacques Corbeil, Joshua Heimbach, Kalpana Karra, Rachel Lyne, Julie M. Sullivan, Yo Yehudi, Gos Micklem, Michel Dumontier

Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

Semantic Research Platform for Model Organisms.

Maxime Déraspe, Kalpana Karra, Gail Binkley, Julie M. Sullivan, Gos Micklem, Jacques Corbeil, J. Michael Cherry, Michel Dumontier

Proceedings of the First International Workshop on Biomedical Data Integration and Discovery (BMDID 2016) co-located with The 15th International Semantic Web Conference (ISWC 2016), 2016

Understanding the Systems Biology of Pathogen Virulence Using Semantic Methodologies.

David Rhee, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden

Proceedings of the Tenth IEEE International Conference on Semantic Computing, 2016

2015

Araport: the Arabidopsis Information Portal.

Vivek Krishnakumar, Matthew R. Hanlon, Sergio Contrino, Erik S. Ferlanti, Svetlana Karamycheva, Maria Kim, Benjamin D. Rosen, Chia-Yi Cheng, Walter Moreira, Stephen A. Mock, Joseph Stubbs, Julie M. Sullivan, Konstantinos Krampis, Jason R. Miller, Gos Micklem, Matthew Vaughn, Christopher D. Town

Nucleic Acids Res., 2015

toxoMine: an integrated omics data warehouse for <i>Toxoplasma gondii</i> systems biology research.

David B. Rhee, Matthew McKnight Croken, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden

Database J. Biol. Databases Curation, 2015

2014

InterMine: extensive web services for modern biology.

Alex Kalderimis, Rachel Lyne, Daniela Butano, Sergio Contrino, Mike Lyne, Joshua Heimbach, Fengyuan Hu, Richard N. Smith, Radek Stepan, Julie M. Sullivan, Gos Micklem

Nucleic Acids Res., 2014

<i>BioJS DAGViewer</i>: A reusable JavaScript component for displaying directed graphs.

Alex Kalderimis, Radek Stepan, Julie M. Sullivan, Rachel Lyne, Michael Lyne, Gos Micklem

F1000Research, 2014

<i>BioJS InterMineTable Component</i>: A BioJS component for displaying data from InterMine compatible webservice endpoints.

Alex Kalderimis, Radek Stepan, Julie M. Sullivan, Rachel Lyne, Michael Lyne, Gos Micklem

F1000Research, 2014

<i>BioJS InterMine List Analysis</i>: A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints.

Alex Kalderimis, Radek Stepan, Julie M. Sullivan, Rachel Lyne, Michael Lyne, Gos Micklem

F1000Research, 2014

2012

modMine: flexible access to modENCODE data.

Sergio Contrino, Richard N. Smith, Daniela Butano, Adrian Carr, Fengyuan Hu, Rachel Lyne, Kim Rutherford, Alex Kalderimis, Julie M. Sullivan, Seth Carbon, Ellen T. Kephart, Paul Lloyd, E. O. Stinson, Nicole L. Washington, Marc D. Perry, Peter Ruzanov, Zheng Zha, Suzanna E. Lewis, Lincoln D. Stein, Gos Micklem

Nucleic Acids Res., 2012

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.

Richard N. Smith, Jelena Aleksic, Daniela Butano, Adrian Carr, Sergio Contrino, Fengyuan Hu, Mike Lyne, Rachel Lyne, Alex Kalderimis, Kim Rutherford, Radek Stepan, Julie M. Sullivan, Matthew Wakeling, Xavier Watkins, Gos Micklem

Bioinform., 2012

YeastMine - an integrated data warehouse for <i>Saccharomyces cerevisiae</i> data as a multipurpose tool-kit.

Rama Balakrishnan, Julie Park, Kalpana Karra, Benjamin C. Hitz, Gail Binkley, Eurie L. Hong, Julie M. Sullivan, Gos Micklem, J. Michael Cherry

Database J. Biol. Databases Curation, 2012

2002

Footprinting, circular dichroism and UV melting studies on neomycin B binding to the packaging region of human immunodeficiency virus type-1 RNA.

Mark P. McPike, Julie M. Sullivan, Jerry Goodisman, James C. Dabrowiak

Nucleic Acids Res., 2002