Aaron T. L. Lun

According to our database, Aaron T. L. Lun authored at least 12 papers between 2012 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

gesel: a JavaScript package for client-side gene set enrichment.

Aaron T. L. Lun, Jayaram Kancherla

J. Open Source Softw., November, 2023

Powering single-cell analyses in the browser with WebAssembly.

Aaron T. L. Lun, Jayaram Kancherla

J. Open Source Softw., October, 2023

2022

basilisk: a Bioconductor package for managing Python environments.

Aaron T. L. Lun

J. Open Source Softw., November, 2022

SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor.

Dario Righelli, Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado-Torres, Shila Ghazanfar, Aaron T. L. Lun, Stephanie C. Hicks, Davide Risso

Bioinform., 2022

2018

beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types.

Aaron T. L. Lun, Hervé Pagès, Mike L. Smith

PLoS Comput. Biol., 2018

iSEE: Interactive SummarizedExperiment Explorer.

Kevin C. Rue-Albrecht, Federico Marini, Charlotte Soneson, Aaron T. L. Lun

F1000Research, 2018

2017

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R.

Davis J. McCarthy, Kieran R. Campbell, Aaron T. L. Lun, Quin F. Wills

Bioinform., 2017

2016

Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments.

Aaron T. L. Lun, Malcolm Perry, Elizabeth Ing-Simmons

F1000Research, 2016

From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline.

Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth

F1000Research, 2016

It's DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR.

Aaron T. L. Lun, Yunshun Chen, Gordon K. Smyth

Proceedings of the Statistical Genomics - Methods and Protocols, 2016

2015

diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data.

Aaron T. L. Lun, Gordon K. Smyth

BMC Bioinform., 2015

2012

FluShuffle and FluResort: new algorithms to identify reassorted strains of the influenza virus by mass spectrometry.

Aaron T. L. Lun, Jason W. H. Wong, Kevin M. Downard

BMC Bioinform., 2012