Abdullah N. Arslan

According to our database1, Abdullah N. Arslan authored at least 40 papers between 1999 and 2018.

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Bibliography

2018
A fast algorithm for all-pairs Hamming distances.
Inf. Process. Lett., 2018

RNA secondary structure graphical rendering library.
Proceedings of the 2018 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2018

Dynamic and Fractional Programming Based Approximation Algorithms for Sequence Alignment with Constraints.
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics, 2018

2017
Efficient RNA structure comparison algorithms.
J. Bioinform. Comput. Biol., 2017

Shape Matching for Rigid Objects by Aligning Sequences Based on Boundary Change Points.
Proceedings of the Combinatorial Image Analysis - 18th International Workshop, 2017

2015
Pattern matching with wildcards and length constraints using maximum network flow.
J. Discrete Algorithms, 2015

Fast Algorithms for Local Similarity Queries in Two Sequences.
Int. J. Found. Comput. Sci., 2015

New algorithms for pattern matching with wildcards and length constraints.
Discret. Math. Algorithms Appl., 2015

2013
PMBC: Pattern mining from biological sequences with wildcard constraints.
Comput. Biol. Medicine, 2013

2012
Weapon ontology annotation using boundary describing sequences.
Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation, 2012

2010
A Fast Longest Common Subsequence Algorithm for Similar Strings.
Proceedings of the Language and Automata Theory and Applications, 2010

An Efficient Multiplication Algorithm for Thin Matrices and for Matrices with Similar Rows and Columns.
Proceedings of the 2010 International Conference on Scientific Computing, 2010

2009
Guided Sequence Alignment.
Proceedings of the Encyclopedia of Data Warehousing and Mining, Second Edition (4 Volumes), 2009

2008
An algorithm with linear expected running time for string editing with substitutions and substring reversals.
Inf. Process. Lett., 2008

2007
Dynamic and Fractional Programming-Based Approximation Algorithms for Sequence Alignment with Constraints.
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics., 2007

Regular expression constrained sequence alignment.
J. Discrete Algorithms, 2007

Mining Frequent Patterns with Wildcards from Biological Sequences.
Proceedings of the IEEE International Conference on Information Reuse and Integration, 2007

A Largest Common d-Dimensional Subsequence of Two d-Dimensional Strings.
Proceedings of the Fundamentals of Computation Theory, 16th International Symposium, 2007

Iterative Refinement of Repeat Sequence Specification Using Constrained Pattern Matching.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

Phylogeny By Top Down Clustering Using a Given Multiple Alignment.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
Efficient string matching with wildcards and length constraints.
Knowl. Inf. Syst., 2006

A Fast Algorithm for the Constrained Multiple Sequence Alignment Problem.
Acta Cybern., 2006

Efficient Approximate Dictionary Look-Up for Long Words over Small Alphabets.
Proceedings of the LATIN 2006: Theoretical Informatics, 2006

A* Algorithms for the Constrained Multiple Sequence Alignment Problem.
Proceedings of the 2006 International Conference on Artificial Intelligence, 2006

FastPCMSA: An Improved Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem.
Proceedings of the 2006 International Conference on Foundations of Computer Science, 2006

Fast Motif Search in Protein Sequence Databases.
Proceedings of the Computer Science, 2006

Space-Efficient Parallel Algorithms for the Constrained Multiple Sequence Alignment Problem.
Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006

An improved algorithm for the regular expression constrained multiple sequence alignment problem.
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

An algorithm for string edit distance allowing substring reversals.
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2005
Algorithms For The Constrained Longest Common Subsequence Problems.
Int. J. Found. Comput. Sci., 2005

Multiple Sequence Alignment Containing a Sequence of Regular Expressions.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

A Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem.
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005

2004
Dynamic Programming Based Approximation Algorithms for Sequence Alignment with Constraints.
INFORMS J. Comput., 2004

Dictionary Look-Up Within Small Edit Distance.
Int. J. Found. Comput. Sci., 2004

2002
Approximation Algorithms for Local Alignment with Length Constraints.
Int. J. Found. Comput. Sci., 2002

Efficient Computation of Long Similar Subsequences.
Proceedings of the String Processing and Information Retrieval, 2002

Algorithms for Local Alignment with Length Constraints.
Proceedings of the LATIN 2002: Theoretical Informatics, 2002

2001
A new approach to sequence comparison: normalized sequence alignment.
Bioinform., 2001

An Improved Upper Bound on the Size of Planar Convex-Hulls.
Proceedings of the Computing and Combinatorics, 7th Annual International Conference, 2001

1999
An Efficient Uniform-Cost Normalized Edit Distance Algorithm.
Proceedings of the Sixth International Symposium on String Processing and Information Retrieval and Fifth International Workshop on Groupware, 1999


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